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[180502_at]

Description H12I19.1 /REP_DB=WormBase Gene ID /WP=CE16173 /TR=O45618 /GB=CAB11539.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 44      4grp_high_8_8 > 28      6grp_total > 65      4grp_total > 20      6grp_cgc > 66      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 32.4
(-3)
A 		40.4
(-2.3)
A 		41.1
(-2.2)
P 		101
(3)
A 		69
B 44.7
(0.5)
P 		65.8
(3)
P 		15.1
(-3)
A 		22.2
(-2.2)
P 		51
C 69.4
(-0.5)
M 		44.6
(-2)
A 		29
(-3)
P 		127
(3)
P 		98
avr 48.8
(-0.8) 		50.3
(-0.6) 		28.4
(-3) 		83.4
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 7.3
(-3)
A 		16.6
(-1.8)
A 		34.5
(0.5)
A 		32
(0.1)
A 		42.3
(1.4)
P 		54.6
(3)
P 		47
B 37.2
(0.4)
P 		36.3
(0.2)
M 		38.3
(0.7)
P 		48.7
(3)
P 		30.7
(-1)
P 		21.7
(-3)
A 		27
C 35.4
(0.1)
A 		56.4
(3)
P 		35.8
(0.2)
A 		33.6
(-0.1)
A 		12.8
(-3)
A 		37.1
(0.3)
P 		44
avr 26.6
(-3) 		36.4
(2.1) 		36.2
(2) 		38.1
(3) 		28.6
(-2) 		37.8
(2.8) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 11.8
(0)
A 		8.8
(-3)
A 		10.7
(-1.1)
P 		14.8
(3)
A 		6
B 14.2
(2.1)
P 		16.2
(3)
P 		3.5
(-3)
A 		4.7
(-2.4)
P 		13
C 23
(3)
M 		12.8
(-1.7)
A 		10.1
(-3)
P 		21.4
(2.3)
P 		13
avr 16.3
(3) 		12.6
(0.3) 		8.1
(-3) 		13.6
(1) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 1.3
(-3)
A 		5.9
(-0.7)
A 		7.5
(0.1)
A 		8.1
(0.4)
A 		12.8
(2.8)
P 		13.3
(3)
P 		12
B 13
(3)
P 		12.1
(1.9)
M 		9.3
(-1.5)
P 		12.9
(2.9)
P 		12.5
(2.4)
P 		8.1
(-3)
A 		5
C 13.1
(1.1)
A 		17.2
(3)
P 		9.1
(-0.7)
A 		6.8
(-1.8)
A 		4.1
(-3)
A 		12.4
(0.8)
P 		13
avr 9.1
(-2) 		11.7
(3) 		8.6
(-3) 		9.3
(-1.6) 		9.8
(-0.7) 		11.3
(2.2) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180502_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8508
Sequence Type Exemplar sequence
Representative Public ID H12I19.1 NCBI
Target Description H12I19.1 /REP_DB=WormBase Gene ID /WP=CE16173 /TR=O45618 /GB=CAB11539.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070306
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000013882 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14129613:14144932:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
H12I19.7 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14129365-14134054(+) 96.71 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB11536 Hypothetical protein H12I19.2 [Caenorhabditis elegans] ref|NP_502708.1| Serpentine Receptor, class Z family member (srz-31) [Caenorhabditis elegans] 1.0E-101
blast CAB11539 Hypothetical protein H12I19.1 [Caenorhabditis elegans] ref|NP_502707.2| Serpentine Receptor, class Z family member (srz-42) [Caenorhabditis elegans] 8.0E-63
blast T23080 hypothetical protein H12I19.3 - Caenorhabditis elegans 1.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 3.6E-30
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 2.8E-25
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 2.9E-80
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 5.4E-29
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000013882 18 5-24,34-65,86-108,133-155,162-181,191-213,245-262,282-304,321-343,353-375,382-404,419-441,468-490,503-525,545-567,587-608,629-651,661-678
Sequence
Target Sequence 
>C. ELEGANS:180502_AT
gaaggtgcaatgtccatgctttatgcaattcttttaattttactgattttgctgaacttc
tcctgccaatttaagttttttattggtttcatttgtcttctcatacttagtctagtgact
aacatccttgcagctaatgatttatcatattttgtattccctttcgcgttggcagctatc
accagctatacactttttgtcataactcaagttttccattttctgacgtttcttctagca
gctgagcgagtattggtttactttttccgatcaaccgaggagaaaatatcactgtttcaa
aattttttgaaaaatagaatacaagttttgtatcgcgcctttgtggttagggattttgta
tttgtgatttacaccgtgaaatctgattcggaaaatgtttggcatttcacgaaccataca
gttttgtattcgataatgtttgtctccatcgacaattttattttcatctctgccgttttc
tatattccgatttacgtcagtgtccgaaaacttgcatacctcgcatcagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGTGCAATGTCCATGCTTTATG 217 335 1237 Antisense
TACTGATTTTGCTGAACTTCTCCTG 187 647 1277 Antisense
TGGTTTCATTTGTCTTCTCATACTT 368 551 1320 Antisense
GTCTAGTGACTAACATCCTTGCAGC 31 469 1346 Antisense
TATCATATTTTGTATTCCCTTTCGC 513 659 1379 Antisense
GCTATCACCAGCTATACACTTTTTG 695 303 1411 Antisense
TCCATTTTCTGACGTTTCTTCTAGC 453 591 1451 Antisense
TTTTGTATCGCGCCTTTGTGGTTAG 585 677 1562 Antisense
ATCTCTGCCGTTTTCTATATTCCGA 346 33 1702 Antisense
TATTCCGATTTACGTCAGTGTCCGA 45 665 1719 Antisense
AAAACTTGCATACCTCGCATCAGCT 344 131 1743 Antisense
Sequence Source Affymetrix Proprietary Database