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[180501_s_at]

Description F44D12.4 /REP_DB=WormBase Gene ID /WP=CE03329 /TR=Q20393 /GB=CAA92600.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 25      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 13.7
(-3)
A 		38.9
(3)
A 		38.4
(2.9)
A 		34.8
(2)
A 		25
B 9.6
(-2.9)
A 		8.3
(-3)
A 		46.2
(0.7)
A 		70
(3)
A 		62
C 30.8
(1.1)
A 		42.8
(3)
A 		5.3
(-3)
A 		6.8
(-2.8)
A 		38
avr 18
(-3) 		30
(0.7) 		30
(0.7) 		37.2
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 762
1 2 3 4 5 6 range
A 20
(-3)
A 		31.3
(-2.9)
A 		19.9
(-3)
A 		81.5
(-2.5)
P 		463
(0.5)
P 		776.7
(3)
P 		757
B 23.4
(-3)
A 		33.3
(-2.9)
A 		19.8
(-3)
A 		59.3
(-2.7)
P 		505.8
(0.8)
P 		781.8
(3)
P 		762
C 26.1
(-3)
A 		47.5
(-2.8)
A 		38.2
(-2.9)
P 		51
(-2.8)
A 		456.6
(0.9)
P 		685.1
(3)
P 		659
avr 23.2
(-3) 		37.4
(-2.9) 		26
(-3) 		63.9
(-2.7) 		475.1
(0.7) 		747.9
(3) 		725
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 5
(-3)
A 		8.4
(1.1)
A 		10
(3)
A 		5.1
(-2.9)
A 		5
B 3.1
(-2.5)
A 		2.1
(-3)
A 		10.7
(1)
A 		14.9
(3)
A 		13
C 10.2
(1.9)
A 		12.3
(3)
A 		1.9
(-2.6)
A 		1.2
(-3)
A 		11
avr 6.1
(-3) 		7.6
(3) 		7.5
(2.6) 		7.1
(1) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 288
1 2 3 4 5 6 range
A 3.7
(-3)
A 		11.1
(-2.8)
A 		4.3
(-3)
A 		20.7
(-2.4)
P 		139.7
(1.4)
P 		189.1
(3)
P 		185
B 8.1
(-2.9)
A 		11.1
(-2.9)
A 		4.8
(-3)
A 		15.7
(-2.8)
P 		205.5
(1.2)
P 		291.5
(3)
P 		287
C 9.7
(-3)
A 		14.5
(-2.9)
A 		9.7
(-3)
P 		10.3
(-3)
A 		147.7
(0.8)
P 		229.3
(3)
P 		220
avr 7.2
(-3) 		12.2
(-2.8) 		6.3
(-3) 		15.6
(-2.8) 		164.3
(1.1) 		236.6
(3) 		230
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180501_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10191
Sequence Type Exemplar sequence
Representative Public ID F44D12.4 NCBI
Target Description F44D12.4 /REP_DB=WormBase Gene ID /WP=CE03329 /TR=Q20393 /GB=CAA92600.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069409(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069409 NCBI Caenorhabditis elegans F44D12.4 (F44D12.4) mRNA, complete cds. 11/11 None
SNAP00000020514 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10026415:10027586:-1 11/11 None
GENEFINDER00000020524 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10026415:10027586:-1 11/11 None
F44D12.4 ENSEMBL cdna:known chromosome:CEL140:IV:10026415:10027637:-1 gene:F44D12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10026420-10027592(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F44D12.4
Entrez Gene 177865 Entrez gene
SwissProt Q20393 EMBL-EBI
WormBase CE32187 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.31166.1.S1_AT similar to PDZ domain protein GIPC2 cfa
CHICKEN:GGA.10758.1.S1_AT GIPC PDZ domain containing family, member 2 gga
HG-U133_PLUS_2:236548_AT GIPC PDZ domain containing family, member 2 hs
HG-U133B:236548_AT GIPC PDZ domain containing family, member 2 hs
HG-U133_PLUS_2:219970_AT GIPC PDZ domain containing family, member 2 hs
HG-U133A:219970_AT GIPC PDZ domain containing family, member 2 hs
HG-U133A_2:219970_AT GIPC PDZ domain containing family, member 2 hs
U133_X3P:G8923083_3P_AT GIPC PDZ domain containing family, member 2 hs
U133_X3P:HS.147975.0.A1_3P_AT GIPC PDZ domain containing family, member 2 hs
HG-U95E:70333_AT GIPC PDZ domain containing family, member 2 hs
HG-U95D:84306_AT GIPC PDZ domain containing family, member 2 hs
HG-U95D:79228_R_AT GIPC PDZ domain containing family, member 2 hs
HG-U95E:83029_AT GIPC PDZ domain containing family, member 2 hs
HU35KSUBA:T71481_AT GIPC PDZ domain containing family, member 2 hs
MG-U74AV2:101950_AT GIPC PDZ domain containing family, member 2 mm
MOE430A:1417178_AT GIPC PDZ domain containing family, member 2 mm
MOUSE430A_2:1417178_AT GIPC PDZ domain containing family, member 2 mm
MOUSE430_2:1417178_AT GIPC PDZ domain containing family, member 2 mm
MOE430B:1457330_AT GIPC PDZ domain containing family, member 2, mRNA (cDNA clone MGC:18334 IMAGE:4238716) mm
MOUSE430_2:1457330_AT GIPC PDZ domain containing family, member 2, mRNA (cDNA clone MGC:18334 IMAGE:4238716) mm
MU19KSUBB:TC32129_AT GIPC PDZ domain containing family, member 2, mRNA (cDNA clone MGC:18334 IMAGE:4238716) mm
MU11KSUBA:D19476_RC_I_AT GIPC PDZ domain containing family, member 2, mRNA (cDNA clone MGC:18334 IMAGE:4238716) mm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92600 Hypothetical protein F44D12.4 [Caenorhabditis elegans] ref|NP_501810.2| F44D12.4 [Caenorhabditis elegans] 0.0
blast NP_498017 C35D10.2 [Caenorhabditis elegans] gb|AAA62558.1| Hypothetical protein C35D10.2 [Caenorhabditis elegans] 1.0E-169
blast NP_498017 C35D10.2 [Caenorhabditis elegans] gb|AAA62558.1| Hypothetical protein C35D10.2 [Caenorhabditis elegans] 1.0E-164
blast CAE71137 Hypothetical protein CBG17992 [Caenorhabditis briggsae] 1.0E-158
Sequence
Target Sequence 
>C. ELEGANS:180501_S_AT
gacagtcactgacaacggactcggaaatgcatttatcaaggtcataagcccaggttcggt
gttcgatcgtatgcgtccagcaacacaagttggtcaactcattgaggcgattaatggaga
gtctgtgctcggtaaaagacattaccaagttgctcgtatgttgaaaagtattcgtcgcgg
cgaggaatgtatcattcgattgattgctccaaagagtgcggatccaggaactatgaagat
gactaggaaaactggcggagatttagcaaaaggaaccattcgtttcaaatcggaaggtgg
atttgctgttgaagatattcaagatcagatgatccaggctgagatgtgcgggaaactcaa
cgaactgttcgaccaatatttgggagttcaagatgatcaattggccatgagaatatggga
aactgcctcaaactgcgagacactttggcaactcagtgaagccatcaaacagtcggagct
ctcaatgttcgagttcccggatggattggta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAGTCACTGACAACGGACTCGGA 291 369 447 Antisense
CATAAGCCCAGGTTCGGTGTTCGAT 193 183 489 Antisense
TCGTATGCGTCCAGCAACACAAGTT 412 603 513 Antisense
TAATGGAGAGTCTGTGCTCGGTAAA 234 637 558 Antisense
AAGACATTACCAAGTTGCTCGTATG 575 153 582 Antisense
TGCTCCAAAGAGTGCGGATCCAGGA 110 583 651 Antisense
TGATCCAGGCTGAGATGTGCGGGAA 348 565 776 Antisense
GCGGGAAACTCAACGAACTGTTCGA 511 289 794 Antisense
TATGGGAAACTGCCTCAAACTGCGA 276 653 860 Antisense
ACTGCGAGACACTTTGGCAACTCAG 236 99 878 Antisense
GTTCGAGTTCCCGGATGGATTGGTA 681 441 933 Antisense
Sequence Source Affymetrix Proprietary Database