[Home] | [Total List]

[180500_at] 7TM chemoreceptor, srb family

Description C48B6.5 /REP_DB=WormBase Gene ID /WP=CE08807 /TR=O01509 /GB=AAC48165.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 20      6grp_total > 55      4grp_total > 19      6grp_cgc > 55      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 25.4
(-3)
M 		30.7
(-1.9)
A 		28.3
(-2.4)
A 		53.2
(3)
M 		28
B 44.6
(0.1)
P 		56
(3)
P 		32.8
(-3)
P 		50.5
(1.6)
P 		23
C 32.3
(-1.7)
A 		37.9
(-1.3)
P 		15.1
(-3)
A 		97.2
(3)
P 		82
avr 34.1
(-1.7) 		41.5
(-0.7) 		25.4
(-3) 		67
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 43.4
(0.7)
A 		23.1
(-1.9)
A 		52.9
(2)
P 		15
(-3)
A 		49.5
(1.5)
P 		60.7
(3)
P 		46
B 13.4
(-3)
A 		30.7
(0.3)
P 		44.8
(3)
P 		37.3
(1.6)
P 		44.3
(2.9)
P 		37.3
(1.6)
P 		31
C 26.2
(-3)
A 		71.2
(3)
P 		27
(-2.9)
A 		31.2
(-2.3)
A 		27.8
(-2.8)
A 		44
(-0.6)
P 		45
avr 27.7
(-3) 		41.7
(1.3) 		41.6
(1.3) 		27.8
(-3) 		40.5
(0.9) 		47.3
(3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 9.2
(3)
M 		6.7
(-3)
A 		7.4
(-1.3)
A 		7.8
(-0.4)
M 		3
B 14.2
(3)
P 		13.8
(2.6)
P 		7.6
(-3)
P 		10.8
(-0.1)
P 		7
C 10.7
(-0.1)
A 		10.9
(0.1)
P 		5.2
(-3)
A 		16.4
(3)
P 		11
avr 11.4
(2.6) 		10.5
(1.6) 		6.7
(-3) 		11.7
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 8
(-0.7)
A 		8.2
(-0.6)
A 		11.5
(1.2)
P 		3.8
(-3)
A 		14.9
(3)
P 		14.8
(2.9)
P 		11
B 4.7
(-3)
A 		10.2
(-0.5)
P 		10.9
(-0.2)
P 		9.9
(-0.7)
P 		18
(3)
P 		13.9
(1.2)
P 		13
C 9.7
(-1.7)
A 		21.7
(3)
P 		6.9
(-2.8)
A 		6.3
(-3)
A 		9
(-1.9)
A 		14.7
(0.3)
P 		15
avr 7.5
(-2.4) 		13.4
(2.2) 		9.8
(-0.6) 		6.7
(-3) 		14
(2.6) 		14.5
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180500_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1978
Sequence Type Exemplar sequence
Representative Public ID C48B6.5 NCBI
Target Description C48B6.5 /REP_DB=WormBase Gene ID /WP=CE08807 /TR=O01509 /GB=AAC48165.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059568(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059568 NCBI Caenorhabditis elegans Serpentine Receptor, class B (beta) family member (srb-15) (srb-15) mRNA, complete cds. 10/11 None
GENEFINDER00000029815 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6905887:6908751:-1 11/11 None
C48B6.5 ENSEMBL cdna:known chromosome:CEL140:I:6905887:6908751:-1 gene:C48B6.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029803 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6905817-6908682(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srb family
Gene Symbol srb-15
Ensembl C48B6.5
Entrez Gene 183571 Entrez gene
SwissProt O01509 EMBL-EBI
WormBase CE38163 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491969 Serpentine Receptor, class B (beta) family member (srb-15) [Caenorhabditis elegans] gb|AAC48165.2| Serpentine receptor, class b (beta) protein 15 [Caenorhabditis elegans] sp|O01509|SRB15_CAEEL Serpentine receptor class beta-15 (Protein srb-15) 0.0
blast NP_491969 Serpentine Receptor, class B (beta) family member (srb-15) [Caenorhabditis elegans] gb|AAC48165.2| Serpentine receptor, class b (beta) protein 15 [Caenorhabditis elegans] sp|O01509|SRB15_CAEEL Serpentine receptor class beta-15 (Protein srb-15) 1.0E-153
blast AAC48305 Serpentine receptor, class b (beta) protein 7 [Caenorhabditis elegans] ref|NP_498571.2| Serpentine Receptor, class B (beta) family member (srb-7) [Caenorhabditis elegans] 2.0E-90
blast 2123261V chemosensory receptor 4.0E-89
blast AAC48305 Serpentine receptor, class b (beta) protein 7 [Caenorhabditis elegans] ref|NP_498571.2| Serpentine Receptor, class B (beta) family member (srb-7) [Caenorhabditis elegans] 6.0E-70
blast 2123261V chemosensory receptor 8.0E-70
Protein Domains
Database ID Description E-Value
Pfam IPR002184 EMBL-EBI Integral membrane protein Srb, nematode type 5.7E-76
Pfam IPR002184 EMBL-EBI Integral membrane protein Srb, nematode type 5.4E-100
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491969.2 7 22-44,57-79,106-128,140-162,185-207,235-257,277-299
C48B6.5 6 22-44,64-86,106-128,143-162,188-210,230-252
GENEFINDER00000029815 6 22-44,64-86,106-128,143-162,188-210,230-252
Sequence
Target Sequence 
>C. ELEGANS:180500_AT
attccactattctcaaaacatccatgtaatttattgatacctgatcaatatctaaaaatc
gggaatactaccgtatcaattttcatgtctctttccacattctttcctatttctattaca
attgaacgattcattgcaatgaaaatggcaagaacttatgagaagacacgtgtacgactt
ggtccaatactaactggatgtaatatacttcttgatttgcttattgtgttttttatttat
cgagacgaaaagtttgatgatggatcgatttcctttgtgttctttcctaaaactcttgct
ccaaaggtctctagatcaagtatttttgtagtattttgtcatgtaatattatttggattt
tatgtgattggaatcatgattcttagatattttggaagtatttttattccggatccagct
gatttgatggcaacaagaggagcttttactacaatgatatccttatataatcttgttgtt
gggtctgttgcagtctatttgaatcatttgattaaaactcgaaaatctgaggaaataacc
ggcactgttcgaattcaagcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCCACTATTCTCAAAACATCCAT 499 7 259 Antisense
AATTTTCATGTCTCTTTCCACATTC 464 175 336 Antisense
TCCACATTCTTTCCTATTTCTATTA 215 589 352 Antisense
GACACGTGTACGACTTGGTCCAATA 663 365 423 Antisense
GATGGATCGATTTCCTTTGTGTTCT 288 407 517 Antisense
GTGTTCTTTCCTAAAACTCTTGCTC 468 485 535 Antisense
AACTCTTGCTCCAAAGGTCTCTAGA 702 139 549 Antisense
TTATTCCGGATCCAGCTGATTTGAT 588 673 662 Antisense
ATAATCTTGTTGTTGGGTCTGTTGC 289 25 725 Antisense
GGTCTGTTGCAGTCTATTTGAATCA 362 503 740 Antisense
AACCGGCACTGTTCGAATTCAAGCG 357 145 795 Antisense
Sequence Source Affymetrix Proprietary Database