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[180499_at]

Description T04D1.2 /REP_DB=WormBase Gene ID /WP=CE18194 /TR=O61844 /GB=AAC17557.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 36.5
(3)
A 		7
(-3)
A 		21.7
(-0)
P 		23.1
(0.3)
A 		30
B 33.3
(-0.2)
A 		44
(3)
A 		24.2
(-3)
A 		43.4
(2.8)
P 		20
C 20.2
(-0.9)
A 		34.1
(0.6)
A 		1
(-3)
A 		56.3
(3)
P 		55
avr 30
(0.4) 		28.4
(0) 		15.6
(-3) 		40.9
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 25.1
(0.3)
A 		35.9
(2)
P 		28.9
(0.9)
A 		4.5
(-3)
A 		42.4
(3)
A 		4.9
(-2.9)
A 		38
B 40.7
(3)
M 		30.2
(1.4)
A 		1.6
(-3)
A 		36.9
(2.4)
A 		37.1
(2.4)
P 		38.8
(2.7)
P 		39
C 26.8
(-1.4)
A 		31.7
(-0.7)
A 		22.5
(-2)
A 		58.1
(3)
A 		17.2
(-2.8)
A 		15.8
(-3)
A 		42
avr 30.9
(2.1) 		32.6
(2.8) 		17.7
(-3) 		33.2
(3) 		32.2
(2.6) 		19.8
(-2.2) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 13.3
(3)
A 		1.5
(-3)
A 		5.7
(-0.9)
P 		3.4
(-2)
A 		12
B 10.6
(2.7)
A 		10.9
(3)
A 		5.6
(-3)
A 		9.2
(1.1)
P 		5
C 6.7
(1)
A 		9.8
(3)
A 		0.3
(-3)
A 		9.5
(2.8)
P 		10
avr 10.2
(3) 		7.4
(0.3) 		3.9
(-3) 		7.4
(0.3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 4.6
(-1.2)
A 		12.8
(3)
P 		6.3
(-0.3)
A 		1.1
(-3)
A 		12.8
(3)
A 		1.2
(-2.9)
A 		12
B 14.1
(2.6)
M 		10.1
(1)
A 		0.4
(-3)
A 		9.8
(0.8)
A 		15.1
(3)
P 		14.5
(2.8)
P 		15
C 9.9
(1.3)
A 		9.7
(1.1)
A 		5.7
(-2.6)
A 		11.7
(3)
A 		5.6
(-2.7)
A 		5.3
(-3)
A 		6
avr 9.5
(1.6) 		10.9
(2.7) 		4.1
(-3) 		7.5
(-0.1) 		11.2
(3) 		7
(-0.5) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180499_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.463
Sequence Type Exemplar sequence
Representative Public ID T04D1.2 NCBI
Target Description T04D1.2 /REP_DB=WormBase Gene ID /WP=CE18194 /TR=O61844 /GB=AAC17557.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059024(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059024 NCBI Caenorhabditis elegans T04D1.2 (T04D1.2) mRNA, complete cds. 11/11 None
GENEFINDER00000041253 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4675140:4685181:1 11/11 None
T04D1.2 ENSEMBL cdna:known chromosome:CEL140:I:4679672:4682756:1 gene:T04D1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4679671-4682756(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T04D1.2
Entrez Gene 188058 Entrez gene
SwissProt O61844 EMBL-EBI
WormBase CE18194 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17557 Hypothetical protein T04D1.2 [Caenorhabditis elegans] ref|NP_491425.1| T04D1.2 [Caenorhabditis elegans] 0.0
blast AAC17558 Uncoordinated protein 57 [Caenorhabditis elegans] ref|NP_491424.2| UNCoordinated family member (unc-57) [Caenorhabditis elegans] 0.0
blast AAQ96373 endophilin [Caenorhabditis elegans] 1.0E-180
blast CAA21028 Hypothetical protein Y39A1A.16 [Caenorhabditis elegans] ref|NP_499353.1| Y39A1A.16 [Caenorhabditis elegans] 4.0E-51
blast AAA83507 Hypothetical protein F19C7.3 [Caenorhabditis elegans] ref|NP_500594.1| F19C7.3 [Caenorhabditis elegans] 1.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.2E-5
Pfam IPR001452 EMBL-EBI SH3 1.0E-19
Sequence
Target Sequence 
>C. ELEGANS:180499_AT
attttcgattgatcatctcgaccttatgacggatcgcgagaagatttttggagattacag
aaaagtttttaaacatccattgtttcgtaaatgtcattatgtagagtttcacgagccttc
caagttttcaacaaaagatttggaaaatctgcagaaaatgtttgatttgcataaatttta
tgcgcgatgtgatcagaagaaacatttcaattttcaaaagatgctgaagattccgcggat
tagtgtccacgaagcttacaatatcaaaatagaggacttaatgaacaacaactgcaaaga
aataatattatggaataacgatttacaaatatttgaaataacaaaattcatttgtcattg
gttatctggaaaattgccaagccttgaaagacttcgactacatatgtttcacgattggga
aatttttgaggatatcctgattggcattgataacaaaaagagagatgaaaatcaaccgaa
aacattaaaatacggagtttattccctggattgttcaaatggacgagatattattcggaa
agatgggcaaattgctactctttttaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTTCGATTGATCATCTCGACCTT 110 15 546 Antisense
ATCTCGACCTTATGACGGATCGCGA 505 31 560 Antisense
TATGTAGAGTTTCACGAGCCTTCCA 596 655 643 Antisense
TCACGAGCCTTCCAAGTTTTCAACA 657 625 654 Antisense
GATTCCGCGGATTAGTGTCCACGAA 431 433 774 Antisense
GTGTCCACGAAGCTTACAATATCAA 283 487 788 Antisense
TTGCCAAGCCTTGAAAGACTTCGAC 704 699 919 Antisense
AGACTTCGACTACATATGTTTCACG 608 71 934 Antisense
TGAGGATATCCTGATTGGCATTGAT 570 567 972 Antisense
AATACGGAGTTTATTCCCTGGATTG 175 125 1034 Antisense
TGGGCAAATTGCTACTCTTTTTACA 213 555 1089 Antisense
Sequence Source Affymetrix Proprietary Database