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[180498_at]

Description F22E12.3 /REP_DB=WormBase Gene ID /WP=CE05697 /TR=Q19740 /GB=CAA94891.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 41      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 174
1 2 3 4 range
A 46.5
(-3)
A 		187.1
(2.3)
P 		204.3
(3)
P 		133
(0.3)
P 		158
B 55.3
(-3)
A 		176.6
(3)
P 		156.6
(2)
P 		96.6
(-1)
P 		121
C 30.4
(-3)
A 		140.1
(3)
P 		139.4
(3)
P 		122.2
(2)
P 		110
avr 44.1
(-3) 		167.9
(3) 		166.8
(2.9) 		117.3
(0.5) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 220
1 2 3 4 5 6 range
A 46.9
(-3)
A 		155.7
(-0)
P 		266.5
(3)
P 		144.4
(-0.3)
P 		92.5
(-1.8)
P 		57.8
(-2.7)
A 		220
B 70
(-3)
A 		209.4
(3)
P 		166.9
(1.2)
P 		106.1
(-1.4)
P 		144.4
(0.2)
P 		70.8
(-3)
P 		139
C 58.1
(-3)
A 		210.4
(3)
P 		90
(-1.7)
P 		153.8
(0.8)
P 		73.6
(-2.4)
P 		67.7
(-2.6)
P 		152
avr 58.3
(-3) 		191.8
(3) 		174.5
(2.2) 		134.8
(0.4) 		103.5
(-1) 		65.4
(-2.7) 		134
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 16.9
(-3)
A 		40.6
(0.9)
P 		53.4
(3)
P 		19.5
(-2.6)
P 		37
B 17.6
(-3)
A 		43.6
(3)
P 		36.3
(1.3)
P 		20.6
(-2.3)
P 		26
C 10.1
(-3)
A 		40.3
(1.7)
P 		48.6
(3)
P 		20.6
(-1.4)
P 		39
avr 14.9
(-3) 		41.5
(2.1) 		46.1
(3) 		20.2
(-2) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 8.6
(-3)
A 		55.4
(2.7)
P 		58
(3)
P 		36.6
(0.4)
P 		27.9
(-0.7)
P 		14.1
(-2.3)
A 		49
B 24.4
(-3)
A 		69.7
(3)
P 		40.5
(-0.9)
P 		28.1
(-2.5)
P 		58.7
(1.5)
P 		26.4
(-2.7)
P 		45
C 21.5
(-3)
A 		64.2
(3)
P 		22.9
(-2.8)
P 		30.9
(-1.7)
P 		23.8
(-2.7)
P 		22.7
(-2.8)
P 		43
avr 18.2
(-3) 		63.1
(3) 		40.5
(-0) 		31.9
(-1.2) 		36.8
(-0.5) 		21.1
(-2.6) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180498_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11509
Sequence Type Exemplar sequence
Representative Public ID F22E12.3 NCBI
Target Description F22E12.3 /REP_DB=WormBase Gene ID /WP=CE05697 /TR=Q19740 /GB=CAA94891.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073284(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073284 NCBI Caenorhabditis elegans F22E12.3 (F22E12.3) mRNA, complete cds. 11/11 None
SNAP00000027156 ENSEMBL cdna:SNAP chromosome:CEL140:V:10461925:10463528:-1 10/11 None
GENEFINDER00000027161 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10461883:10463689:-1 10/11 None
F22E12.3 ENSEMBL cdna:known chromosome:CEL140:V:10461925:10463528:-1 gene:F22E12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10461924-10463528(-) 98.13 100.0
Public Domain and Genome References
Gene Title
Ensembl F22E12.3
Entrez Gene 184849 Entrez gene
SwissProt Q19740 EMBL-EBI
WormBase CE05697 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94891 Hypothetical protein F22E12.3 [Caenorhabditis elegans] ref|NP_505685.1| F22E12.3 [Caenorhabditis elegans] 1.0E-160
blast CAA94891 Hypothetical protein F22E12.3 [Caenorhabditis elegans] ref|NP_505685.1| F22E12.3 [Caenorhabditis elegans] 1.0E-98
blast CAA94891 Hypothetical protein F22E12.3 [Caenorhabditis elegans] ref|NP_505685.1| F22E12.3 [Caenorhabditis elegans] 2.0E-88
blast CAE64811 Hypothetical protein CBG09605 [Caenorhabditis briggsae] 3.0E-84
blast CAE64811 Hypothetical protein CBG09605 [Caenorhabditis briggsae] 7.0E-84
blast CAE64811 Hypothetical protein CBG09605 [Caenorhabditis briggsae] 8.0E-84
blast AAA98701 G01D9.3 [Caenorhabditis briggsae] 7.0E-14
blast CAE68754 Hypothetical protein CBG14686 [Caenorhabditis briggsae] 2.0E-13
Sequence
Target Sequence 
>C. ELEGANS:180498_AT
aatttgtacatttcattccgacattaattggaaattgaatcaaaaaattatttcaacttc
agctgaaaatactgcacaattaccatgttgtcgtgatcgttttggagaacaagcatgcca
atcattgagaaaatcacagccagcattatttgaaaagagatgcttgactgatcacgattt
tgccgctattgattgctgtggagaatgcagaaaatatattgaaagaaataagatcagttc
cgagaattctcgttcactccagaaggctccagcaatgtgtaaagacaaacattctattgg
attctgcagacgattcaaagcatctggaatgggaaaatacagctgttctgatgcagaatt
tgctgttcgagtttgtcgtcattcttgtggatattgtaatgatgagttgtactcaatgaa
aaatgcacctgctctgtgttctgacacaaaccgaatgattccaattgtgaatggaacaca
tctgtattgggcatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTTGTACATTTCATTCCGACATT 22 175 291 Antisense
GCACAATTACCATGTTGTCGTGATC 402 317 364 Antisense
GCTTGACTGATCACGATTTTGCCGC 469 307 452 Antisense
TTTGCCGCTATTGATTGCTGTGGAG 663 667 469 Antisense
GTTCCGAGAATTCTCGTTCACTCCA 638 439 527 Antisense
TTCACTCCAGAAGGCTCCAGCAATG 248 687 543 Antisense
AACATTCTATTGGATTCTGCAGACG 430 137 578 Antisense
GCAGAATTTGCTGTTCGAGTTTGTC 207 313 643 Antisense
GAGTTTGTCGTCATTCTTGTGGATA 279 399 659 Antisense
AAAAATGCACCTGCTCTGTGTTCTG 552 129 709 Antisense
ATGGAACACATCTGTATTGGGCATT 186 53 761 Antisense
Sequence Source Affymetrix Proprietary Database