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[180496_at]

Description ZC196.6 /REP_DB=WormBase Gene ID /WP=CE15076 /TR=O01626 /GB=AAB52297.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 10      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 162
1 2 3 4 range
A 3.4
(-3)
A 		3.5
(-3)
A 		2.8
(-3)
A 		127.7
(3)
P 		125
B 26.4
(-1.8)
A 		30.6
(-1.6)
A 		3.4
(-3)
A 		119.6
(3)
P 		116
C 2.5
(-3)
A 		21.4
(-2.3)
A 		4
(-2.9)
A 		164.1
(3)
P 		162
avr 10.8
(-2.7) 		18.5
(-2.3) 		3.4
(-3) 		137.1
(3) 		134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 236
1 2 3 4 5 6 range
A 47.6
(-2.6)
A 		35
(-3)
A 		50.9
(-2.5)
A 		98.3
(-1.2)
P 		245.2
(3)
P 		103.8
(-1)
P 		210
B 9.7
(-3)
A 		54
(-1.7)
A 		10.8
(-3)
A 		115.1
(0.1)
P 		214.7
(3)
P 		168.8
(1.7)
P 		205
C 14.2
(-3)
A 		45.4
(-1.9)
A 		32.3
(-2.4)
A 		188.6
(3)
P 		167.4
(2.3)
P 		150.1
(1.7)
P 		174
avr 23.8
(-3) 		44.8
(-2.3) 		31.3
(-2.8) 		134
(0.6) 		209.1
(3) 		140.9
(0.8) 		185
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 1.2
(-2.8)
A 		0.8
(-3)
A 		0.7
(-3)
A 		18.7
(3)
P 		18
B 8.4
(-1.2)
A 		7.6
(-1.3)
A 		0.8
(-3)
A 		25.5
(3)
P 		25
C 0.8
(-3)
A 		6.1
(-1.8)
A 		1.4
(-2.9)
A 		27.7
(3)
P 		27
avr 3.5
(-2.3) 		4.8
(-2) 		1
(-3) 		24
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 8.8
(-3)
A 		12.4
(-2.7)
A 		11.1
(-2.8)
A 		24.9
(-1.5)
P 		74
(3)
P 		25.3
(-1.5)
P 		65
B 3.4
(-2.9)
A 		18
(-1.9)
A 		2.6
(-3)
A 		30.5
(-1)
P 		87.2
(3)
P 		62.9
(1.3)
P 		85
C 5.3
(-3)
A 		13.9
(-1.9)
A 		8.2
(-2.6)
A 		37.9
(1)
P 		54.2
(3)
P 		50.2
(2.5)
P 		49
avr 5.8
(-3) 		14.8
(-2.2) 		7.3
(-2.9) 		31.1
(-0.7) 		71.8
(3) 		46.1
(0.7) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180496_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11517
Sequence Type Exemplar sequence
Representative Public ID ZC196.6 NCBI
Target Description ZC196.6 /REP_DB=WormBase Gene ID /WP=CE15076 /TR=O01626 /GB=AAB52297.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072846(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072846 NCBI Caenorhabditis elegans ZC196.6 (ZC196.6) mRNA, complete cds. 11/11 None
SNAP00000023099 ENSEMBL cdna:SNAP chromosome:CEL140:V:8729116:8731356:1 10/11 None
GENEFINDER00000023104 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8728186:8731356:1 11/11 None
ZC196.6 ENSEMBL cdna:known chromosome:CEL140:V:8729116:8731356:1 gene:ZC196.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8729116-8731357(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC196.6
Entrez Gene 191105 Entrez gene
SwissProt O01626 EMBL-EBI
WormBase CE36057 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52297 Hypothetical protein ZC196.6 [Caenorhabditis elegans] ref|NP_505247.2| ZC196.6 [Caenorhabditis elegans] 0.0
blast AAB52297 Hypothetical protein ZC196.6 [Caenorhabditis elegans] ref|NP_505247.2| ZC196.6 [Caenorhabditis elegans] 1.0E-163
Sequence
Target Sequence 
>C. ELEGANS:180496_AT
ggcattgagcattctaacattgttgcagaaataagagaagacgaaaaaacagatgaagtg
gcttgggaagatttaaatgcaaaagaaaaaacagacgacgaaaatcaaacaaatgataat
ctgcccgaaaaacaactaacaaattctgcggaagttcctccattgtgtccagatgatgct
ggtatgtcgaaaatcataatccaagcgaactatcttccaaatgatggttctagtaacgga
gaaaagtctgaagaccgagatgcaaatgaaatcatggatttgtctcaaaatcctccgaca
gatcaatctgtaaaagaaagctctgcaccgcctcttgaaaacccatctaattttcagccg
gaaacttcaaacaaatatgccgatctgactttggatgaccttgaatttgactcactgaac
tcgaatgacatgaccaacgagcttgaagcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCATTGAGCATTCTAACATTGTTG 501 537 970 Antisense
AACAAATTCTGCGGAAGTTCCTCCA 324 131 1107 Antisense
AGTTCCTCCATTGTGTCCAGATGAT 254 65 1122 Antisense
TAATCCAAGCGAACTATCTTCCAAA 190 637 1166 Antisense
AAAATCCTCCGACAGATCAATCTGT 316 133 1256 Antisense
CTGTAAAAGAAAGCTCTGCACCGCC 334 239 1277 Antisense
GAAAACCCATCTAATTTTCAGCCGG 188 355 1306 Antisense
ATGCCGATCTGACTTTGGATGACCT 525 41 1346 Antisense
GGATGACCTTGAATTTGACTCACTG 565 513 1362 Antisense
GACTCACTGAACTCGAATGACATGA 626 373 1378 Antisense
GACATGACCAACGAGCTTGAAGCCT 71 369 1396 Antisense
Sequence Source Affymetrix Proprietary Database