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[180495_at] transposase

Description C09B7.2 /REP_DB=WormBase Gene ID /WP=CE08027 /TR=Q22894 /GB=AAB04581.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 72      4grp_highest_8_8 > 0      4grp_high_8_8 > 36      6grp_highest_nonorm > 53      6grp_total > 73      4grp_total > 43      6grp_highest_sub > 03_04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 421
1 2 3 4 range
A 463.1
(1.2)
P 		463.5
(1.2)
P 		511.6
(3)
P 		347.4
(-3)
P 		164
B 438.2
(-3)
P 		768.1
(3)
P 		467.9
(-2.5)
P 		458.5
(-2.6)
P 		330
C 581.3
(-2.3)
P 		721.1
(3)
P 		562.2
(-3)
P 		620.8
(-0.8)
P 		159
avr 494.2
(-2.4) 		650.9
(3) 		513.9
(-1.7) 		475.6
(-3) 		175

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 762
1 2 3 4 5 6 range
A 503.5
(-3)
P 		838.3
(0.5)
P 		1071.1
(3)
P 		1044.5
(2.7)
P 		786.5
(-0)
P 		711.8
(-0.8)
P 		568
B 474.4
(-3)
P 		879.1
(0.2)
P 		1224.5
(3)
P 		969
(1)
P 		1025
(1.4)
P 		843.7
(-0)
P 		750
C 490.6
(-3)
P 		1023.1
(1.3)
P 		940.2
(0.6)
P 		1235.9
(3)
P 		789.3
(-0.6)
P 		967.5
(0.8)
P 		745
avr 489.5
(-3) 		913.5
(1.3) 		1078.6
(3) 		1083.1
(3) 		866.9
(0.8) 		841
(0.6) 		594
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 168.6
(3)
P 		100.6
(-0.5)
P 		133.7
(1.2)
P 		50.9
(-3)
P 		118
B 139.7
(-0.3)
P 		189.7
(3)
P 		108.4
(-2.3)
P 		97.7
(-3)
P 		92
C 192.4
(2.1)
P 		207.3
(3)
P 		195.9
(2.3)
P 		104.7
(-3)
P 		103
avr 166.9
(3) 		165.9
(2.9) 		146
(1.5) 		84.4
(-3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 324
1 2 3 4 5 6 range
A 92.8
(-3)
P 		298.2
(3)
P 		233.3
(1.1)
P 		264.9
(2)
P 		237.3
(1.2)
P 		173.3
(-0.6)
P 		205
B 165.1
(-3)
P 		292.6
(0)
P 		297.4
(0.2)
P 		256.7
(-0.8)
P 		416.4
(3)
P 		314.6
(0.6)
P 		251
C 181.8
(-3)
P 		312.2
(2.5)
P 		239.3
(-0.6)
P 		248.5
(-0.2)
P 		255.4
(0.1)
P 		323.9
(3)
P 		142
avr 146.6
(-3) 		301
(2.9) 		256.7
(1.2) 		256.7
(1.2) 		303
(3) 		270.6
(1.8) 		156
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180495_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18337
Sequence Type Exemplar sequence
Representative Public ID C09B7.2 NCBI
Target Description C09B7.2 /REP_DB=WormBase Gene ID /WP=CE08027 /TR=Q22894 /GB=AAB04581.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076072(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076072 NCBI Caenorhabditis elegans C09B7.2 (transposase) mRNA, complete cds. 11/11 None
C09B7.2 ENSEMBL cdna:known chromosome:CEL140:X:2668889:2671572:1 gene:C09B7.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014404 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2668888-2671572(+) 95.78 100.0
Public Domain and Genome References
Gene Title transposase
Ensembl C09B7.2
Entrez Gene 182438 Entrez gene
SwissProt Q22894 EMBL-EBI
WormBase CE08027 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04581 Hypothetical protein C09B7.2 [Caenorhabditis elegans] ref|NP_508473.1| C09B7.2 [Caenorhabditis elegans] 1.0E-141
blast CAA90437 Hypothetical protein C09H10.5 [Caenorhabditis elegans] ref|NP_496378.1| C09H10.5 [Caenorhabditis elegans] 7.0E-39
blast CAE59571 Hypothetical protein CBG02968 [Caenorhabditis briggsae] 9.0E-28
Sequence
Target Sequence 
>C. ELEGANS:180495_AT
agcaagtgctcgaggaccggcatttcgttaaaatggaaccatcaatggcctcgaaaaaac
aattcaatacgtttatggatttgctctgcatatctacagcggatatgccacattccgagt
acatgacaaactacattgcgtgggaagaagtcgaatttatggatggtatccaagagtttt
tggagccatcggatctgcctaccggacatcatccttcattatatcatcacttaggacaca
actttgcttcaaattgcaccttaaaagatgaaaagtatattcgtcaagctcacgacgtta
tagatgatcatacgaaatttgacaactatatgtacgatcagatgacaagaaaagagtgga
ccgatcttaatctcttgatcttaaagaaaaattcttcgaggtcactcccggagtttcaaa
aaaaaacagtcaatttggcacagaatttcttcgatatcgaaaatgttagacttaagtttt
tctttttaacaactaactttggaattattgataacagtgttaaagcaattgttcatttga
aaatcatttacattcacgggcctgtgaaatgtcaactgcgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCAAGTGCTCGAGGACCGGCATTT 270 75 134 Antisense
GGATTTGCTCTGCATATCTACAGCG 65 511 210 Antisense
GGATATGCCACATTCCGAGTACATG 102 509 234 Antisense
AGTTTTTGGAGCCATCGGATCTGCC 486 63 308 Antisense
GGACATCATCCTTCATTATATCATC 390 525 337 Antisense
CATCACTTAGGACACAACTTTGCTT 691 207 358 Antisense
ATATTCGTCAAGCTCACGACGTTAT 155 17 410 Antisense
AGTGGACCGATCTTAATCTCTTGAT 645 57 488 Antisense
CTTCGAGGTCACTCCCGGAGTTTCA 247 215 527 Antisense
AAATCATTTACATTCACGGGCCTGT 394 117 674 Antisense
GGGCCTGTGAAATGTCAACTGCGTC 101 489 691 Antisense
Sequence Source Affymetrix Proprietary Database