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[180494_at] 7TM chemoreceptor, srx family

Description K07C6.9 /REP_DB=WormBase Gene ID /WP=CE17180 /TR=O44642 /GB=AAB94251.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 76      4grp_total > 02      6grp_cgc > 67      6grp_cgc_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 4.7
(-3)
A 		6.1
(-2.9)
A 		3.8
(-3)
A 		117
(3)
A 		113
B 8.7
(-2.7)
A 		4.3
(-3)
A 		5.3
(-2.9)
A 		83.2
(3)
P 		79
C 7.4
(-2.8)
A 		15.9
(-2.3)
A 		2.6
(-3)
A 		123.3
(3)
M 		121
avr 6.9
(-2.8) 		8.8
(-2.7) 		3.9
(-3) 		107.8
(3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 4
(-3)
A 		4.9
(-2.6)
A 		6.6
(-2)
A 		15
(1.3)
A 		9.6
(-0.8)
A 		19.4
(3)
A 		15
B 20.1
(-0.3)
A 		4.8
(-3)
A 		6.7
(-2.7)
A 		8
(-2.4)
A 		14.1
(-1.4)
A 		39.1
(3)
A 		34
C 2.1
(-2.9)
A 		10.2
(-1.6)
A 		7
(-2.1)
A 		38.8
(3)
A 		1.2
(-3)
A 		20.8
(0.1)
A 		38
avr 8.7
(-2.4) 		6.6
(-3) 		6.8
(-2.9) 		20.6
(1.2) 		8.3
(-2.5) 		26.4
(3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 1.7
(-2.7)
A 		1.3
(-2.9)
A 		1
(-3)
A 		17.1
(3)
A 		16
B 2.8
(-2.4)
A 		1.1
(-3)
A 		1.2
(-3)
A 		17.7
(3)
P 		17
C 2.5
(-2.5)
A 		4.6
(-1.9)
A 		0.9
(-3)
A 		20.8
(3)
M 		20
avr 2.3
(-2.6) 		2.3
(-2.6) 		1
(-3) 		18.5
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 0.7
(-3)
A 		1.7
(-1.5)
A 		1.4
(-2)
A 		3.8
(1.7)
A 		2.9
(0.3)
A 		4.7
(3)
A 		4
B 7
(-0.5)
A 		1.6
(-3)
A 		1.6
(-3)
A 		2.1
(-2.8)
A 		5.7
(-1.1)
A 		14.6
(3)
A 		13
C 0.8
(-2.7)
A 		3.1
(-0.8)
A 		1.8
(-1.9)
A 		7.8
(3)
A 		0.4
(-3)
A 		7
(2.4)
A 		7
avr 2.8
(-2) 		2.1
(-2.6) 		1.6
(-3) 		4.6
(-0.5) 		3
(-1.8) 		8.8
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180494_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15313
Sequence Type Exemplar sequence
Representative Public ID K07C6.9 NCBI
Target Description K07C6.9 /REP_DB=WormBase Gene ID /WP=CE17180 /TR=O44642 /GB=AAB94251.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071684(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071684 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-66) (srx-66) mRNA, complete cds. 10/11 None
SNAP00000025761 ENSEMBL cdna:SNAP chromosome:CEL140:V:3919402:3920666:1 11/11 None
GENEFINDER00000025777 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3919402:3920628:1 10/11 None
K07C6.9 ENSEMBL cdna:known chromosome:CEL140:V:3919402:3920638:1 gene:K07C6.9 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3919401-3920666(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-66
Ensembl K07C6.9
Entrez Gene 187097 Entrez gene
SwissProt O44642 EMBL-EBI
WormBase CE35336 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB94251 Serpentine receptor, class x protein 66 [Caenorhabditis elegans] ref|NP_504085.2| Serpentine Receptor, class X family member (srx-66) [Caenorhabditis elegans] 1.0E-171
blast AAB94251 Serpentine receptor, class x protein 66 [Caenorhabditis elegans] ref|NP_504085.2| Serpentine Receptor, class X family member (srx-66) [Caenorhabditis elegans] 1.0E-154
blast AAB94250 Serpentine receptor, class x protein 65 [Caenorhabditis elegans] ref|NP_504086.2| Serpentine Receptor, class X family member (srx-65) [Caenorhabditis elegans] 1.0E-114
blast AAB94250 Serpentine receptor, class x protein 65 [Caenorhabditis elegans] ref|NP_504086.2| Serpentine Receptor, class X family member (srx-65) [Caenorhabditis elegans] 1.0E-107
blast AAB94243 Serpentine receptor, class x protein 63 [Caenorhabditis elegans] ref|NP_504090.2| Serpentine Receptor, class X family member (srx-63) [Caenorhabditis elegans] 1.0E-105
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504085.2 6 7-29,81-103,124-146,175-197,218-240,250-272
K07C6.9 6 7-29,81-103,124-146,175-197,218-240,250-272
SNAP00000025761 6 7-29,49-71,78-97,125-147,223-242,247-269
GENEFINDER00000025777 6 7-29,81-103,124-146,175-197,218-240,250-272
Sequence
Target Sequence 
>C. ELEGANS:180494_AT
gtttggtttccaattgcctacgataaagctttcaacctgtccaaaaccaaatacatgatt
ttcattttgtggatgtttgagcttacttttgctctatgtttttacgaatacctctgtcac
ttctacttcgatgagaaaatccgttttctgaccttcactaattctccagtgtgtggaatt
gttggttggtatggagattttctaaagaacgtctttattgtcgcaatcataatgaccctc
gacatatgtaccttgatcaaagtcaagctgttatcctgtaaactaggaagtggaatcagt
ccagcttctgtccggaagctctcttctcgtgatcgccgcttcttgcgtcaaactgtgatt
caaggatccgtttttatgttggaacttctgacatatttcttcattccacaatattttgaa
aatcgatggattgtattttttggaacttcatttgcatgggttgcagtgcatgtggccgat
gggtacattaattgtaatactgtgcaacccggatgtacgcaactttattttccgaaagaa
gaaatcttatcaagtgtctacgacaatccatgtttcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTGGTTTCCAATTGCCTACGATA 413 447 325 Antisense
GATAAAGCTTTCAACCTGTCCAAAA 400 421 346 Antisense
TTACGAATACCTCTGTCACTTCTAC 477 677 426 Antisense
TTTTCTGACCTTCACTAATTCTCCA 471 677 468 Antisense
GACCCTCGACATATGTACCTTGATC 434 381 558 Antisense
AGTGGAATCAGTCCAGCTTCTGTCC 279 59 613 Antisense
GCCGCTTCTTGCGTCAAACTGTGAT 313 285 659 Antisense
TTGCAGTGCATGTGGCCGATGGGTA 154 703 785 Antisense
AATACTGTGCAACCCGGATGTACGC 193 173 820 Antisense
GATGTACGCAACTTTATTTTCCGAA 113 405 836 Antisense
GTGTCTACGACAATCCATGTTTCAG 276 485 878 Antisense
Sequence Source Affymetrix Proprietary Database