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[180493_at]

Description C26B9.6 /REP_DB=WormBase Gene ID /WP=CE04099 /TR=Q18199 /GB=AAA82454.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 12      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 137
1 2 3 4 range
A 46.4
(-2.4)
P 		82
(-0.6)
A 		34.8
(-3)
A 		151
(3)
P 		116
B 86.2
(0.2)
A 		54.2
(-1.9)
A 		38.1
(-3)
A 		129.4
(3)
P 		91
C 77.1
(-1.5)
P 		52.3
(-2.7)
A 		45.8
(-3)
A 		171.9
(3)
P 		126
avr 69.9
(-1.4) 		62.8
(-1.7) 		39.6
(-3) 		150.8
(3) 		111

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 140.1
(3)
P 		82.5
(-0.7)
P 		70.4
(-1.4)
P 		56.9
(-2.3)
A 		46.1
(-3)
A 		45.7
(-3)
A 		94
B 85.2
(3)
P 		70.9
(1.5)
P 		48.1
(-0.8)
M 		26.2
(-3)
A 		56.8
(0.1)
P 		60.1
(0.4)
A 		59
C 117.1
(3)
P 		68.6
(-0.5)
P 		83.7
(0.6)
A 		67.3
(-0.5)
A 		53
(-1.6)
A 		32.8
(-3)
A 		84
avr 114.1
(3) 		74
(-0.5) 		67.4
(-1.1) 		50.1
(-2.7) 		52
(-2.5) 		46.2
(-3) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 16.9
(0.6)
P 		17.8
(1)
A 		9.1
(-3)
A 		22.1
(3)
P 		13
B 27.5
(3)
A 		13.4
(-1.5)
A 		8.8
(-3)
A 		27.6
(3)
P 		19
C 25.5
(1.5)
P 		15
(-3)
A 		16
(-2.6)
A 		29
(3)
P 		14
avr 23.3
(1.8) 		15.4
(-1.3) 		11.3
(-3) 		26.2
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 25.8
(1.8)
P 		29.3
(3)
P 		15.3
(-1.6)
P 		14.4
(-1.9)
A 		13.9
(-2.1)
A 		11.1
(-3)
A 		18
B 29.6
(3)
P 		23.6
(1.4)
P 		11.7
(-1.7)
M 		6.9
(-3)
A 		23.1
(1.3)
P 		22.4
(1.1)
A 		23
C 43.4
(3)
P 		20.9
(-1.2)
P 		21.3
(-1.1)
A 		13.5
(-2.5)
A 		17.2
(-1.9)
A 		11
(-3)
A 		32
avr 32.9
(3) 		24.6
(0.7) 		16.1
(-1.7) 		11.6
(-3) 		18.1
(-1.2) 		14.8
(-2.1) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180493_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16691
Sequence Type Exemplar sequence
Representative Public ID C26B9.6 NCBI
Target Description C26B9.6 /REP_DB=WormBase Gene ID /WP=CE04099 /TR=Q18199 /GB=AAA82454.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076503(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076503 NCBI Caenorhabditis elegans C26B9.6 (C26B9.6) mRNA, complete cds. 11/11 None
SNAP00000015896 ENSEMBL cdna:SNAP chromosome:CEL140:X:5332987:5335396:-1 10/11 None
GENEFINDER00000015903 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5333042:5335396:-1 11/11 None
C26B9.6 ENSEMBL cdna:known chromosome:CEL140:X:5333042:5335396:-1 gene:C26B9.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5333042-5335397(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C26B9.6
Entrez Gene 182932 Entrez gene
SwissProt Q18199 EMBL-EBI
WormBase CE35410 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82454 Hypothetical protein C26B9.6 [Caenorhabditis elegans] ref|NP_508904.2| C26B9.6 [Caenorhabditis elegans] 0.0
blast AAA82454 Hypothetical protein C26B9.6 [Caenorhabditis elegans] ref|NP_508904.2| C26B9.6 [Caenorhabditis elegans] 1.0E-145
blast CAE74439 Hypothetical protein CBG22172 [Caenorhabditis briggsae] 4.0E-72
blast CAE74439 Hypothetical protein CBG22172 [Caenorhabditis briggsae] 1.0E-61
blast CAE74440 Hypothetical protein CBG22173 [Caenorhabditis briggsae] 7.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 2.2E-8
Pfam IPR004170 EMBL-EBI WWE domain 4.6E-26
Pfam IPR004170 EMBL-EBI WWE domain 1.3E-25
Pfam IPR004170 EMBL-EBI WWE domain 4.1E-14
Sequence
Target Sequence 
>C. ELEGANS:180493_AT
aactgcgggcatgagttctgctatgtttgcctgaaaagtaactttgccatgggtaatgat
tgtcccgtttgtcgtgggaaaatctctccaagtcttttttcgatgcctattcgctacgac
ttggatatccatatgcagtgccccgaagattatgctgacgaatgtgcagatatggttgat
agagatcatttccgaaaatcttacatcaaaggacaaggttttttaagcgatcttcaagtt
caattttgcatttttaattcagaaccaacaaaatcaaagcctacattgagacggtcaaaa
cgaacgactagggaaaaatattattggatttatgagtcatcgtcgtttggttactatcga
tatgatcctaaagatgaaaagtaccttgaagaatgctactgtcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTGCGGGCATGAGTTCTGCTATG 685 141 376 Antisense
GAGTTCTGCTATGTTTGCCTGAAAA 127 399 388 Antisense
GTAATGATTGTCCCGTTTGTCGTGG 689 461 428 Antisense
GTCGTGGGAAAATCTCTCCAAGTCT 349 471 446 Antisense
TCTCCAAGTCTTTTTTCGATGCCTA 658 607 460 Antisense
TTTCGATGCCTATTCGCTACGACTT 629 669 473 Antisense
ATTCGCTACGACTTGGATATCCATA 238 9 484 Antisense
ATATCCATATGCAGTGCCCCGAAGA 291 21 500 Antisense
GTGCCCCGAAGATTATGCTGACGAA 347 477 513 Antisense
GAGTCATCGTCGTTTGGTTACTATC 206 399 709 Antisense
GTACCTTGAAGAATGCTACTGTCGA 47 459 756 Antisense
Sequence Source Affymetrix Proprietary Database