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[180492_s_at]

Description Y43F8A.5 /REP_DB=WormBase Gene ID /WP=CE21884 /TR=Q9XWL3 /GB=CAA21644.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 02      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 70      6grp_total > 24      4grp_total > 46      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 271
1 2 3 4 range
A 393.3
(3)
P 		329.8
(0.5)
P 		242
(-2.9)
P 		239.8
(-3)
P 		154
B 487.9
(3)
P 		277.8
(-1.6)
P 		216.7
(-3)
P 		269.7
(-1.8)
P 		271
C 453.4
(3)
P 		264.4
(-2.5)
P 		247.1
(-3)
P 		287.1
(-1.8)
P 		206
avr 444.9
(3) 		290.7
(-1.4) 		235.3
(-3) 		265.5
(-2.1) 		210

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 377
1 2 3 4 5 6 range
A 485.6
(3)
P 		247.4
(-0.8)
P 		230.2
(-1.1)
P 		163.5
(-2.1)
P 		108.4
(-3)
P 		185
(-1.8)
P 		377
B 416.9
(3)
P 		262.8
(-0.2)
P 		235.8
(-0.7)
P 		251.1
(-0.4)
P 		125.9
(-3)
P 		180.8
(-1.9)
P 		291
C 294.7
(2)
P 		276.1
(1.5)
P 		329.2
(3)
P 		174.3
(-1.4)
P 		117.2
(-3)
P 		151.7
(-2)
P 		212
avr 399.1
(3) 		262.1
(0.1) 		265.1
(0.1) 		196.3
(-1.3) 		117.2
(-3) 		172.5
(-1.8) 		282
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 143.2
(3)
P 		71.6
(-1)
P 		63.3
(-1.4)
P 		35.1
(-3)
P 		108
B 155.6
(3)
P 		68.6
(-2)
P 		50.2
(-3)
P 		57.5
(-2.6)
P 		105
C 150.1
(3)
P 		76
(-1.4)
P 		86.1
(-0.8)
P 		48.4
(-3)
P 		102
avr 149.6
(3) 		72.1
(-1.5) 		66.5
(-1.9) 		47
(-3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 89.5
(3)
P 		88
(2.8)
P 		50.1
(-1.2)
P 		41.5
(-2.1)
P 		32.7
(-3)
P 		45.1
(-1.7)
P 		57
B 145.1
(3)
P 		87.5
(-0.7)
P 		57.3
(-2.6)
P 		66.5
(-2)
P 		51.1
(-3)
P 		67.4
(-2)
P 		94
C 109.2
(3)
P 		84.2
(1)
P 		83.8
(0.9)
P 		35.1
(-3)
P 		37.9
(-2.8)
P 		50.8
(-1.7)
P 		74
avr 114.6
(3) 		86.6
(0.7) 		63.7
(-1.1) 		47.7
(-2.4) 		40.6
(-3) 		54.4
(-1.9) 		74
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180492_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13052
Sequence Type Exemplar sequence
Representative Public ID Y43F8A.5 NCBI
Target Description Y43F8A.5 /REP_DB=WormBase Gene ID /WP=CE21884 /TR=Q9XWL3 /GB=CAA21644.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075372(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075372 NCBI Caenorhabditis elegans Y43F8A.5 (Y43F8A.5) mRNA, complete cds. 11/11 A 
GENEFINDER00000034975 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19387625:19392693:-1 11/11 None
Y43F8A.5 ENSEMBL cdna:known chromosome:CEL140:V:19387460:19392693:-1 gene:Y43F8A.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034969 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19387624-19392693(-) 98.46 100.0
Public Domain and Genome References
Gene Title
Ensembl Y43F8A.5
Entrez Gene 180270 Entrez gene
SwissProt Q9XWL3 EMBL-EBI
WormBase CE21884 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21644 Hypothetical protein Y43F8A.5 [Caenorhabditis elegans] ref|NP_507773.1| Y43F8A.5 [Caenorhabditis elegans] 0.0
blast CAE60770 Hypothetical protein CBG04458 [Caenorhabditis briggsae] 0.0
blast CAE60770 Hypothetical protein CBG04458 [Caenorhabditis briggsae] 1.0E-176
blast CAE72731 Hypothetical protein CBG19969 [Caenorhabditis briggsae] 5.0E-39
blast CAE72731 Hypothetical protein CBG19969 [Caenorhabditis briggsae] 3.0E-34
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507773.1 10 7-26,61-83,92-114,124-146,184-206,245-267,279-301,323-345,366-388,398-420
Y43F8A.5 10 7-26,61-83,92-114,124-146,184-206,245-267,279-301,323-345,366-388,398-420
GENEFINDER00000034975 9 5-27,71-93,103-125,163-185,224-246,258-280,302-324,345-367,377-399
Sequence
Target Sequence 
>C. ELEGANS:180492_S_AT
cccagctattactttaatgatcctcaacatgcgctacctggaggcgcccgaactcaatcc
agaagatctcacaacttccatcaaaaaatcggatgacatatcagaaaatgtcaatgttca
tgacccagaagctctgccggttttacatcacattcccactgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCAGCTATTACTTTAATGATCCTC 218 259 1245 Antisense
TTAATGATCCTCAACATGCGCTACC 164 685 1258 Antisense
ATCCTCAACATGCGCTACCTGGAGG 27 39 1264 Antisense
TCAACATGCGCTACCTGGAGGCGCC 150 629 1268 Antisense
GCCCGAACTCAATCCAGAAGATCTC 265 287 1290 Antisense
TCCAGAAGATCTCACAACTTCCATC 709 589 1302 Antisense
AAAATCGGATGACATATCAGAAAAT 509 131 1329 Antisense
TCAATGTTCATGACCCAGAAGCTCT 517 631 1355 Antisense
TGTTCATGACCCAGAAGCTCTGCCG 663 561 1359 Antisense
CAGAAGCTCTGCCGGTTTTACATCA 190 205 1370 Antisense
GTTTTACATCACATTCCCACTGAAA 338 449 1384 Antisense
Sequence Source Affymetrix Proprietary Database