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[180489_at]

Description Y79H2A.1 /REP_DB=WormBase Gene ID /WP=CE23090 /TR=Q9U1S2 /GB=CAB54505.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 23      4grp_highest_8_8 > 23      4grp_high_8_8 > 05      6grp_highest_nonorm > 17      6grp_total > 03      4grp_total > 03      6grp_highest_sub > De      6grp_cgc > 51      6grp_high1_sub > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34632
1 2 3 4 range
A 9408.3
(-2.4)
P 		7916.8
(-2.7)
P 		6196.3
(-3)
P 		40082.9
(3)
P 		33887
B 10985.8
(-1.8)
P 		7571.4
(-2.6)
P 		5587.5
(-3)
P 		32591
(3)
P 		27004
C 8576.4
(-2.4)
P 		6041.7
(-2.9)
P 		5451.3
(-3)
P 		38290.9
(3)
P 		32840
avr 9656.8
(-2.2) 		7176.6
(-2.7) 		5745
(-3) 		36988.3
(3) 		31243

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6485
1 2 3 4 5 6 range
A 15028
(3)
P 		13773.7
(1)
P 		11315.9
(-3)
P 		12511.9
(-1.1)
P 		13685.8
(0.8)
P 		13085.2
(-0.1)
P 		3712
B 12108.8
(1)
P 		13614.1
(3)
P 		10116.3
(-1.7)
P 		13648.5
(3)
P 		10405.8
(-1.3)
P 		9124.8
(-3)
P 		4524
C 11025.7
(0.2)
P 		12565.2
(2.2)
P 		13189.9
(3)
P 		11114.7
(0.3)
P 		12072.5
(1.6)
P 		8543.5
(-3)
P 		4646
avr 12720.8
(1.8) 		13317.7
(3) 		11540.7
(-0.5) 		12425
(1.3) 		12054.7
(0.5) 		10251.2
(-3) 		3067
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5651
1 2 3 4 range
A 3425.6
(-0.4)
P 		1718.5
(-2.9)
P 		1619.8
(-3)
P 		5867.3
(3)
P 		4248
B 3503.3
(-0.7)
P 		1869.9
(-2.4)
P 		1294.7
(-3)
P 		6945.2
(3)
P 		5651
C 2839
(-1.6)
P 		1737
(-3)
P 		1900
(-2.8)
P 		6456.5
(3)
P 		4720
avr 3256
(-0.9) 		1775.1
(-2.8) 		1604.8
(-3) 		6423
(3) 		4818

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2663
1 2 3 4 5 6 range
A 2770.3
(-2.2)
P 		4898.6
(3)
P 		2464.4
(-3)
P 		3173.3
(-1.3)
P 		4129.8
(1.1)
P 		3185.8
(-1.2)
P 		2434
B 4213.3
(2.1)
P 		4531.6
(3)
P 		2456.5
(-3)
P 		3615
(0.3)
P 		4227.8
(2.1)
P 		3402.6
(-0.3)
P 		2075
C 4086.7
(3)
P 		3834
(2.2)
P 		3357.1
(0.6)
P 		2235.2
(-3)
P 		3906.5
(2.4)
P 		2860
(-1)
P 		1852
avr 3690.1
(0.4) 		4421.4
(3) 		2759.3
(-3) 		3007.8
(-2.1) 		4088
(1.8) 		3149.5
(-1.6) 		1662
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180489_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7551
Sequence Type Exemplar sequence
Representative Public ID Y79H2A.1 NCBI
Target Description Y79H2A.1 /REP_DB=WormBase Gene ID /WP=CE23090 /TR=Q9U1S2 /GB=CAB54505.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027781(11), NM_001027780(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027781 NCBI Caenorhabditis elegans Bypass of Response to Pheromone in yeast family member (brp-1) (brp-1) mRNA, complete cds. 11/11 None
NM_001027780 NCBI Caenorhabditis elegans Bypass of Response to Pheromone in yeast family member (brp-1) (brp-1) mRNA, complete cds. 11/11 None
GENEFINDER00000018014 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12020428:12025052:1 11/11 None
SNAP00000018007 ENSEMBL cdna:SNAP chromosome:CEL140:III:12021460:12028596:1 11/11 None
Y79H2A.1a.2 ENSEMBL cdna:known chromosome:CEL140:III:12020424:12025052:1 gene:Y79H2A.1 11/11 None
Y79H2A.1b.1 ENSEMBL cdna:known chromosome:CEL140:III:12020426:12025228:1 gene:Y79H2A.1 11/11 None
Y79H2A.1a.3 ENSEMBL cdna:known chromosome:CEL140:III:12020427:12025052:1 gene:Y79H2A.1 11/11 None
Y79H2A.1a.1 ENSEMBL cdna:known chromosome:CEL140:III:12020428:12025200:1 gene:Y79H2A.1 11/11 None
Y79H2A.1b.2 ENSEMBL cdna:known chromosome:CEL140:III:12020428:12025229:1 gene:Y79H2A.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12020423-12025048(+) 97.23 100.0
Public Domain and Genome References
Ensembl Y79H2A.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54505 Hypothetical protein Y79H2A.1a [Caenorhabditis elegans] ref|NP_001022951.1| Bypass of Response to Pheromone in yeast family member (brp-1) [Caenorhabditis elegans] 2.0E-98
blast CAH19094 Hypothetical protein Y79H2A.1b [Caenorhabditis elegans] ref|NP_001022952.1| Bypass of Response to Pheromone in yeast family member (brp-1) [Caenorhabditis elegans] 2.0E-98
blast AAF39779 Hypothetical protein C51G7.4 [Caenorhabditis elegans] 2.0E-98
blast CAB54505 Hypothetical protein Y79H2A.1a [Caenorhabditis elegans] ref|NP_001022951.1| Bypass of Response to Pheromone in yeast family member (brp-1) [Caenorhabditis elegans] 3.0E-98
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022952.1 1 58-80
NP_001022951.1 1 58-80
Y79H2A.1a.2 1 58-80
Y79H2A.1b.1 1 58-80
Y79H2A.1a.3 1 58-80
Y79H2A.1a.1 1 58-80
Y79H2A.1b.2 1 58-80
GENEFINDER00000018014 1 58-80
Sequence
Target Sequence 
>C. ELEGANS:180489_AT
atcccacaaccatcagttcacgataagatctacgaggaacttcagaagaagtcgcagaac
attccagtcaacgcaccaactcgtcaaatctggacagcaatcactccaactccagctcca
gaagctgcatctggaactgctgacgtcacagcttcacccatcaacactgcattcccagca
gttgtcacgagcagcacaccaatgccagaggatgccgctgaggtttctgatactattctc
agagatatcttctcagctttcgatgagcaaaagaattcagaggcggccaacaaagagctc
aactcagccaccccatcaaccaccgaagagccagaactcgaaggaaagggagcaattgtg
attgaggacagcttcccaagaatcgaagaacgcaccacaacacctgaaccaatggaatct
gaagaagatgctgaacatacatcatctgaagataatcatgagaaggagttggatccattc
gcagctgttctcaaattcttcgagaacaatccaccacgtgaggctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCCACAACCATCAGTTCACGATA 414 37 1081 Antisense
TCAACGCACCAACTCGTCAAATCTG 416 631 1148 Antisense
TCTGGACAGCAATCACTCCAACTCC 561 605 1169 Antisense
GAACTGCTGACGTCACAGCTTCACC 626 347 1214 Antisense
GTTGTCACGAGCAGCACACCAATGC 610 435 1261 Antisense
CACACCAATGCCAGAGGATGCCGCT 196 195 1275 Antisense
GGATGCCGCTGAGGTTTCTGATACT 374 513 1290 Antisense
GAGATATCTTCTCAGCTTTCGATGA 576 395 1322 Antisense
GGCGGCCAACAAAGAGCTCAACTCA 305 541 1362 Antisense
CATTCGCAGCTGTTCTCAAATTCTT 233 217 1556 Antisense
AGAACAATCCACCACGTGAGGCTCT 351 73 1583 Antisense
Sequence Source Affymetrix Proprietary Database