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[180488_at]

Description ZK682.7 /REP_DB=WormBase Gene ID /WP=CE05104 /TR=Q23581 /GB=AAA82420.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 43      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 63.6
(-1.3)
A 		130.1
(3)
A 		74.8
(-0.6)
A 		36.9
(-3)
A 		93
B 100.3
(0.2)
M 		137.8
(3)
A 		68.5
(-2.2)
A 		58
(-3)
A 		80
C 85.9
(0.1)
M 		110.9
(3)
A 		59.4
(-3)
A 		76.3
(-1)
P 		52
avr 83.3
(-0.7) 		126.3
(3) 		67.6
(-2.1) 		57.1
(-3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 136.7
(3)
P 		119.1
(1.7)
P 		94.4
(-0)
A 		69.9
(-1.8)
A 		94.3
(-0)
P 		52.6
(-3)
A 		84
B 188.7
(3)
P 		114.5
(-0.4)
P 		80.5
(-2)
A 		68.4
(-2.6)
M 		59.2
(-3)
A 		76
(-2.2)
A 		130
C 180.4
(3)
P 		146.6
(1.1)
P 		78.3
(-2.7)
A 		87.1
(-2.2)
P 		73.1
(-3)
A 		76.1
(-2.8)
P 		107
avr 168.6
(3) 		126.7
(0.5) 		84.4
(-2) 		75.1
(-2.6) 		75.5
(-2.6) 		68.2
(-3) 		100
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 23.2
(1.7)
A 		28.2
(3)
A 		19.6
(0.7)
A 		5.4
(-3)
A 		23
B 32
(2.4)
M 		34
(3)
A 		15.9
(-2)
A 		12.4
(-3)
A 		22
C 28.4
(1.9)
M 		31.9
(3)
A 		20.7
(-0.5)
A 		12.9
(-3)
P 		19
avr 27.9
(2) 		31.4
(3) 		18.7
(-0.6) 		10.2
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 25.2
(-0.5)
P 		42.4
(3)
P 		20.5
(-1.4)
A 		17.7
(-2)
A 		28.5
(0.2)
P 		12.8
(-3)
A 		30
B 65.7
(3)
P 		38.1
(-0.5)
P 		19.6
(-2.8)
A 		18.1
(-3)
M 		24.1
(-2.2)
A 		28.3
(-1.7)
A 		48
C 66.9
(3)
P 		44.7
(0.3)
P 		19.9
(-2.7)
A 		17.5
(-3)
P 		23.7
(-2.2)
A 		25.5
(-2)
P 		49
avr 52.6
(3) 		41.7
(1.1) 		20
(-2.6) 		17.8
(-3) 		25.4
(-1.7) 		22.2
(-2.2) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180488_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12275
Sequence Type Exemplar sequence
Representative Public ID ZK682.7 NCBI
Target Description ZK682.7 /REP_DB=WormBase Gene ID /WP=CE05104 /TR=Q23581 /GB=AAA82420.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073002(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073002 NCBI Caenorhabditis elegans ZK682.7 (ZK682.7) mRNA, complete cds. 9/11 None
ZK682.7 ENSEMBL cdna:known chromosome:CEL140:V:9293267:9294702:-1 gene:ZK682.7 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9293266-9294702(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK682.7
Entrez Gene 191403 Entrez gene
SwissProt Q23581 EMBL-EBI
WormBase CE36080 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82420 Hypothetical protein ZK682.7 [Caenorhabditis elegans] ref|NP_505403.2| ZK682.7 [Caenorhabditis elegans] 1.0E-106
blast CAE72148 Hypothetical protein CBG19246 [Caenorhabditis briggsae] 2.0E-70
Sequence
Target Sequence 
>C. ELEGANS:180488_AT
gagatccacatggactacgactgccgttaccaattagatcaagtctgacagatctcgtga
agccgaagttacttgagaatcgaaactatcagccacccaggagaaaaacggtaattattg
aaattgagaaatataattttgattacgcattgcagccatcaaaagaccatcactcaaaag
ctgaagaaaattcaaaaaaagcaaaaaagttggaaagaatcaataaattcaaggatgcag
ttctaactgatttaattgaaaatgacacatattctgaccaaatgataatgaattccatca
gacgacatatggaaaaactagccggagttatctcatgggatgatttagaaaaagcagctg
atgaactgattaagaaaatcggtttgaatacaaatgtacaaaatagtagaagaagttcaa
gaagtcgagataaaaatcagaggttcaataaaccaccactaccatacaaagttgaaagaa
tcggaagtgcacagagtttggaatctttatcctcaccgtcatccagttctgctaaaacat
catcgtcttcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGATCCACATGGACTACGACTGCC 283 397 203 Antisense
TACGACTGCCGTTACCAATTAGATC 644 645 218 Antisense
AAGTCTGACAGATCTCGTGAAGCCG 561 155 243 Antisense
GAGAATCGAAACTATCAGCCACCCA 542 391 277 Antisense
TTTTGATTACGCATTGCAGCCATCA 580 677 339 Antisense
GCAGCCATCAAAAGACCATCACTCA 651 311 354 Antisense
ACTAGCCGGAGTTATCTCATGGGAT 672 101 519 Antisense
TTCAATAAACCACCACTACCATACA 581 683 646 Antisense
GAGTTTGGAATCTTTATCCTCACCG 433 399 696 Antisense
CACCGTCATCCAGTTCTGCTAAAAC 361 201 716 Antisense
TCTGCTAAAACATCATCGTCTTCGT 289 609 730 Antisense
Sequence Source Affymetrix Proprietary Database