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[180486_at]

Description F10D11.4 /REP_DB=WormBase Gene ID /WP=CE09326 /TR=O17780 /GB=CAB02916.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 39      4grp_total > 27      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 7
(-2.6)
A 		6.7
(-3)
A 		11.6
(3)
A 		7.3
(-2.3)
A 		5
B 10.4
(-0.2)
A 		9.6
(-0.7)
A 		5.7
(-3)
A 		15.8
(3)
A 		10
C 8.3
(-2.4)
A 		47.6
(3)
A 		4.2
(-3)
A 		41.8
(2.2)
A 		43
avr 8.6
(-2.4) 		21.3
(2.9) 		7.2
(-3) 		21.6
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 57.4
(3)
A 		5.7
(-3)
A 		22.3
(-1.1)
A 		33.5
(0.2)
A 		31.9
(0)
A 		50.6
(2.2)
A 		52
B 8.9
(-2.1)
A 		6.5
(-2.7)
A 		7.1
(-2.5)
A 		4.9
(-3)
A 		32.8
(3)
A 		20.7
(0.4)
A 		28
C 30.1
(0.5)
A 		11.7
(-3)
A 		42.8
(3)
A 		12.3
(-2.9)
A 		32.1
(0.9)
A 		12.5
(-2.8)
A 		31
avr 32.1
(3) 		8
(-3) 		24.1
(1) 		16.9
(-0.8) 		32.3
(3) 		27.9
(1.9) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.5
(1.4)
A 		1.5
(-1.7)
A 		3
(3)
A 		1.1
(-3)
A 		2
B 3.3
(2.7)
A 		2.4
(0.1)
A 		1.3
(-3)
A 		3.4
(3)
A 		2
C 2.8
(-2.4)
A 		13.7
(3)
A 		1.5
(-3)
A 		7
(-0.3)
A 		12
avr 2.9
(-1.5) 		5.9
(3) 		1.9
(-3) 		3.8
(-0.2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 10.6
(2)
A 		2
(-3)
A 		4.9
(-1.3)
A 		8.5
(0.8)
A 		9.6
(1.4)
A 		12.3
(3)
A 		10
B 3.1
(-2.1)
A 		2.2
(-2.6)
A 		1.7
(-2.8)
A 		1.3
(-3)
A 		13.3
(3)
A 		7.7
(0.2)
A 		12
C 11.1
(3)
A 		3.6
(-2.2)
A 		10.9
(2.9)
A 		2.5
(-3)
A 		10.4
(2.5)
A 		4.2
(-1.8)
A 		9
avr 8.3
(1) 		2.6
(-3) 		5.8
(-0.7) 		4.1
(-1.9) 		11.1
(3) 		8.1
(0.9) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180486_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1201
Sequence Type Exemplar sequence
Representative Public ID F10D11.4 NCBI
Target Description F10D11.4 /REP_DB=WormBase Gene ID /WP=CE09326 /TR=O17780 /GB=CAB02916.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059892(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059892 NCBI Caenorhabditis elegans F10D11.4 (F10D11.4) mRNA, complete cds. 11/11 None
SNAP00000043613 ENSEMBL cdna:SNAP chromosome:CEL140:I:8449727:8450545:-1 11/11 None
GENEFINDER00000043622 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8449727:8453056:-1 11/11 None
F10D11.4 ENSEMBL cdna:known chromosome:CEL140:I:8449727:8450458:-1 gene:F10D11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8449657-8450389(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F10D11.4
Entrez Gene 184299 Entrez gene
SwissProt O17780 EMBL-EBI
WormBase CE09326 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02918 Hypothetical protein F10D11.5 [Caenorhabditis elegans] ref|NP_492294.1| F10D11.5 [Caenorhabditis elegans] 0.0
blast CAA87417 Hypothetical protein T15H9.4 [Caenorhabditis elegans] ref|NP_496069.1| T15H9.4 [Caenorhabditis elegans] sp|Q09354|YRY4_CAEEL Hypothetical protein T15H9.4 in chromosome II 9.0E-81
blast CAE57954 Hypothetical protein CBG01013 [Caenorhabditis briggsae] 4.0E-75
blast CAB02916 Hypothetical protein F10D11.4 [Caenorhabditis elegans] ref|NP_492293.1| F10D11.4 [Caenorhabditis elegans] 9.0E-33
blast CAB02916 Hypothetical protein F10D11.4 [Caenorhabditis elegans] ref|NP_492293.1| F10D11.4 [Caenorhabditis elegans] 1.0E-32
blast CAA87418 Hypothetical protein T15H9.5 [Caenorhabditis elegans] ref|NP_496068.1| T15H9.5 [Caenorhabditis elegans] sp|Q09355|YRY5_CAEEL Hypothetical protein T15H9.5 in chromosome II 3.0E-26
blast CAA87418 Hypothetical protein T15H9.5 [Caenorhabditis elegans] ref|NP_496068.1| T15H9.5 [Caenorhabditis elegans] sp|Q09355|YRY5_CAEEL Hypothetical protein T15H9.5 in chromosome II 4.0E-26
Sequence
Target Sequence 
>C. ELEGANS:180486_AT
atgttgctctgtgccaacaataaaaaggatccttcgcccccaccaccaccagactcgctt
tcagagacttcaaaggtccaaaatgtccaggaaacaccaccaaaacctgcagcaccatca
caaatgtcgattgatgaatccaactcgaagaataaaaaactgccgtctgctgataaatct
gtggaagaaattaagaaaccgatttcgcataagaagaaaaagtcgctgatcaaggtgttg
agtaagaagaaggaaaggtcgaagaaaaaggagaaggacaagaaacctgacgaaaaagtg
gaaaaagaagtgaagaaggaagacaaaccggataacaatgaacctcttataaagaatctg
aaaattgcgaagaaagagcaagaagaggaaaatccgaagacggacttggaatcgcatgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTTGCTCTGTGCCAACAATAAAA 617 45 13 Antisense
GTGCCAACAATAAAAAGGATCCTTC 482 477 23 Antisense
CACCAGACTCGCTTTCAGAGACTTC 89 203 59 Antisense
GGTCCAAAATGTCCAGGAAACACCA 634 501 87 Antisense
TGTCCAGGAAACACCACCAAAACCT 98 553 96 Antisense
GATGAATCCAACTCGAAGAATAAAA 604 411 145 Antisense
GAATAAAAAACTGCCGTCTGCTGAT 342 327 162 Antisense
ACTGCCGTCTGCTGATAAATCTGTG 13 99 171 Antisense
AAGTCGCTGATCAAGGTGTTGAGTA 390 157 232 Antisense
CAAACCGGATAACAATGAACCTCTT 36 183 336 Antisense
GAAGACGGACTTGGAATCGCATGAC 159 339 408 Antisense
Sequence Source Affymetrix Proprietary Database