[Home] | [Total List]

[180484_at]

Description Y62H9A.9 /REP_DB=WormBase Gene ID /WP=CE19245 /TR=Q9XWT0 /GB=CAA21565.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 13.1
(-2.4)
A 		64.8
(3)
A 		7.3
(-3)
A 		32.7
(-0.3)
A 		58
B 11.8
(-2.2)
A 		23.5
(-0.1)
A 		7.7
(-3)
A 		39.9
(3)
A 		32
C 4
(-3)
A 		34.6
(3)
A 		19.5
(0)
A 		9.2
(-2)
A 		31
avr 9.6
(-3) 		41
(3) 		11.5
(-2.6) 		27.3
(0.4) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 26.4
(1.5)
A 		15.5
(-1.8)
A 		18.9
(-0.8)
A 		31.5
(3)
A 		29.6
(2.4)
A 		11.6
(-3)
A 		20
B 16.8
(0.1)
A 		25.4
(2.7)
A 		10.9
(-1.7)
A 		26.5
(3)
A 		6.4
(-3)
A 		13.1
(-1)
A 		20
C 3
(-3)
A 		54.2
(3)
A 		7.5
(-2.5)
A 		25.2
(-0.4)
A 		11.7
(-2)
A 		32.6
(0.5)
A 		51
avr 15.4
(-2.1) 		31.7
(3) 		12.4
(-3) 		27.7
(1.8) 		15.9
(-1.9) 		19.1
(-0.9) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 4.8
(-1.6)
A 		14.1
(3)
A 		1.9
(-3)
A 		4.8
(-1.6)
A 		12
B 3.8
(-1.2)
A 		5.8
(0.6)
A 		1.8
(-3)
A 		8.5
(3)
A 		7
C 1.3
(-3)
A 		10
(3)
A 		6.8
(0.8)
A 		1.6
(-2.8)
A 		9
avr 3.3
(-3) 		10
(3) 		3.5
(-2.8) 		5
(-1.5) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 4.9
(-0.9)
A 		5.5
(-0.3)
A 		4.1
(-1.7)
A 		8
(2.1)
A 		8.9
(3)
A 		2.8
(-3)
A 		6
B 5.9
(0.4)
A 		8.4
(3)
A 		2.6
(-3)
A 		7
(1.6)
A 		2.6
(-3)
A 		4.9
(-0.6)
A 		6
C 1.1
(-3)
A 		16.5
(3)
A 		1.9
(-2.7)
A 		5.1
(-1.4)
A 		3.8
(-1.9)
A 		10.9
(0.8)
A 		15
avr 4
(-2.1) 		10.1
(3) 		2.9
(-3) 		6.7
(0.2) 		5.1
(-1.2) 		6.2
(-0.3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180484_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16569
Sequence Type Exemplar sequence
Representative Public ID Y62H9A.9 NCBI
Target Description Y62H9A.9 /REP_DB=WormBase Gene ID /WP=CE19245 /TR=Q9XWT0 /GB=CAA21565.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077589(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077589 NCBI Caenorhabditis elegans Y62H9A.9 (Y62H9A.9) mRNA, complete cds. 11/11 None
SNAP00000025461 ENSEMBL cdna:SNAP chromosome:CEL140:X:11895506:11897317:-1 11/11 None
GENEFINDER00000025475 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11895506:11898061:-1 11/11 None
Y62H9A.9 ENSEMBL cdna:known chromosome:CEL140:X:11895506:11898061:-1 gene:Y62H9A.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11895505-11898061(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y62H9A.9
Entrez Gene 190464 Entrez gene
SwissProt Q9XWT0 EMBL-EBI
WormBase CE19245 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21565 Hypothetical protein Y62H9A.9 [Caenorhabditis elegans] ref|NP_509990.1| Y62H9A.9 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:180484_AT
aaatacttgctctttcctgtatctttccgtgcagaaacttactgcacattggttgttaat
ccacattgcgcagttgtcaagttaagcgaacgcggggatgacacgtgtacgatggttcac
ataggaaccaaaaattgtgatgaatataaagcattaatagttccaaaaattatgaagctc
ttatggcttttcatggatctctatcggccagcagcaaaatacgtcgcattcatggaagat
gctattaccgtccgagaaaaagttcttcccaaattgccatactacgaaaaagcatttcaa
cttgctgttgtttttgagagattacttggaaaagaatacacaatttctggctgggagaac
gccattgagagtcttggcacagggaaaccaaagatgcgcgctgaaatcaaggaactcaga
aaagttattggcgagaaaatatatgtcaaagtgatgatgggctcaaacaaagttgcaagt
caccttcttgagaaacgaagaagaataggagaacaccagaaaaaacaacgtgaagatgcg
gccattaaaaggccttccgattgcgacgagtacgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATACTTGCTCTTTCCTGTATCTT 85 117 496 Antisense
GTTAATCCACATTGCGCAGTTGTCA 33 447 550 Antisense
GAACGCGGGGATGACACGTGTACGA 118 347 583 Antisense
ATGGCTTTTCATGGATCTCTATCGG 483 51 678 Antisense
GATCTCTATCGGCCAGCAGCAAAAT 69 419 691 Antisense
GCAGCAAAATACGTCGCATTCATGG 327 313 706 Antisense
GAAGATGCTATTACCGTCCGAGAAA 49 339 730 Antisense
GTTCTTCCCAAATTGCCATACTACG 684 443 757 Antisense
GGGAAACCAAAGATGCGCGCTGAAA 232 493 877 Antisense
GATGCGGCCATTAAAAGGCCTTCCG 401 413 1030 Antisense
GCCTTCCGATTGCGACGAGTACGAT 83 279 1047 Antisense
Sequence Source Affymetrix Proprietary Database