[Home] | [Total List]

[180483_at]

Description W02D7.8 /REP_DB=WormBase Gene ID /WP=CE14450 /TR=O17529 /GB=AAB63939.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 80      6grp_total > 82      4grp_total > 22      6grp_high1_sub > 02_03_04_05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 186
1 2 3 4 range
A 248.4
(1.8)
P 		169.2
(-1)
P 		112.9
(-3)
P 		283.7
(3)
P 		171
B 249
(3)
P 		175.5
(-1.5)
P 		150.1
(-3)
P 		244.2
(2.7)
P 		99
C 281.1
(3)
P 		122.7
(-2.2)
P 		98.1
(-3)
P 		231.2
(1.4)
P 		183
avr 259.5
(3) 		155.8
(-1.5) 		120.4
(-3) 		253
(2.7) 		139

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 130.7
(-2.4)
P 		196.3
(1.5)
P 		222.5
(3)
P 		209.5
(2.2)
P 		203.9
(1.9)
P 		119.7
(-3)
P 		103
B 120.4
(-3)
P 		232.3
(3)
P 		205.6
(1.6)
P 		167
(-0.5)
P 		227.1
(2.7)
P 		125.9
(-2.7)
P 		112
C 119.5
(-2.3)
P 		215.4
(0.7)
P 		147.2
(-1.4)
P 		287.7
(3)
P 		231.2
(1.2)
P 		97.8
(-3)
P 		190
avr 123.5
(-2.5) 		214.7
(2.6) 		191.8
(1.3) 		221.4
(3) 		220.7
(3) 		114.5
(-3) 		107
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 90.5
(3)
P 		36.7
(-2.3)
P 		29.5
(-3)
P 		41.5
(-1.8)
P 		61
B 79.4
(3)
P 		43.4
(-1.8)
P 		34.8
(-3)
P 		52
(-0.7)
P 		45
C 93
(3)
P 		35.3
(-2.9)
P 		34.2
(-3)
P 		39
(-2.5)
P 		59
avr 87.6
(3) 		38.5
(-2.4) 		32.8
(-3) 		44.2
(-1.8) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 24.1
(-3)
P 		69.8
(3)
P 		48.4
(0.2)
P 		53.1
(0.8)
P 		61.5
(1.9)
P 		29.1
(-2.3)
P 		46
B 41.9
(-3)
P 		77.3
(1.2)
P 		49.9
(-2)
P 		44.2
(-2.7)
P 		92.3
(3)
P 		47
(-2.4)
P 		50
C 44.3
(-1.3)
P 		65.7
(1.7)
P 		37.5
(-2.3)
P 		57.9
(0.6)
P 		74.8
(3)
P 		32.7
(-3)
P 		42
avr 36.8
(-2.9) 		70.9
(2.2) 		45.3
(-1.6) 		51.7
(-0.7) 		76.2
(3) 		36.3
(-3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180483_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11463
Sequence Type Exemplar sequence
Representative Public ID W02D7.8 NCBI
Target Description W02D7.8 /REP_DB=WormBase Gene ID /WP=CE14450 /TR=O17529 /GB=AAB63939.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072745(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072745 NCBI Caenorhabditis elegans W02D7.8 (W02D7.8) mRNA, complete cds. 10/11 None
SNAP00000029336 ENSEMBL cdna:SNAP chromosome:CEL140:V:8307752:8309050:-1 10/11 None
GENEFINDER00000029345 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8307752:8309050:-1 10/11 None
W02D7.8 ENSEMBL cdna:known chromosome:CEL140:V:8307710:8309050:-1 gene:W02D7.8 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8307708-8309051(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W02D7.8
Entrez Gene 189118 Entrez gene
SwissProt O17529 EMBL-EBI
WormBase CE35794 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_505146 W02D7.8 [Caenorhabditis elegans] gb|AAB63939.2| Hypothetical protein W02D7.8 [Caenorhabditis elegans] 1.0E-72
blast CAE66078 Hypothetical protein CBG11294 [Caenorhabditis briggsae] 4.0E-48
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505146.2 1 110-132
W02D7.8 1 110-132
SNAP00000029336 1 110-132
GENEFINDER00000029345 1 110-132
Sequence
Target Sequence 
>C. ELEGANS:180483_AT
gaatccatcaacttctagttcagtcgaaataccaaaaccaataagttctccaagaagaac
tctaccagaagctcctccaagttattatgattttccaccgagttatacatcaaatggaga
aacctttactgatgaattaccagcatattgtccaacagaattccctggcacaaggcaatg
tgctcgagatggaagccgatcaatgtcaggtgttcataatcaacgtgtatttacagtact
tccacgtcaatcatacgctatccgaatgcagagatgtacgtttttcttcataatatcaaa
taagaaacagggaatttttgtttcttcaattaattatttgaagaaaatattaagcacgac
gagtttctccgtctactggccatcttcgtcgacgactcaacaaagtattcgggctcgcct
ttattctgatgcttggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCCATCAACTTCTAGTTCAGTC 407 329 15 Antisense
AGAAGAACTCTACCAGAAGCTCCTC 303 73 67 Antisense
GAAGCTCCTCCAAGTTATTATGATT 282 343 82 Antisense
GAATTACCAGCATATTGTCCAACAG 280 325 148 Antisense
TGTCCAACAGAATTCCCTGGCACAA 467 557 163 Antisense
GAAGCCGATCAATGTCAGGTGTTCA 697 343 206 Antisense
TTTACAGTACTTCCACGTCAATCAT 485 673 244 Antisense
GTCAATCATACGCTATCCGAATGCA 378 463 260 Antisense
AAGCACGACGAGTTTCTCCGTCTAC 590 149 366 Antisense
CTCAACAAAGTATTCGGGCTCGCCT 33 227 410 Antisense
CTCGCCTTTATTCTGATGCTTGGGA 327 233 428 Antisense
Sequence Source Affymetrix Proprietary Database