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[180482_at]

Description K03A11.4 /REP_DB=WormBase Gene ID /WP=CE06074 /TR=Q21167 /GB=CAB00864.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 34      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 58.2
(-3)
A 		78.6
(1.2)
P 		67.4
(-1.1)
P 		87.4
(3)
M 		29
B 51.1
(2.9)
A 		40.4
(1.4)
A 		52.1
(3)
A 		9
(-3)
A 		43
C 25.7
(-3)
A 		73.4
(1)
M 		37.5
(-2)
A 		96.7
(3)
P 		71
avr 45
(-3) 		64.1
(2.9) 		52.3
(-0.7) 		64.4
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 50.5
(-3)
A 		110.9
(1.1)
A 		69.2
(-1.7)
P 		134.6
(2.7)
P 		139.8
(3)
P 		68
(-1.8)
A 		89
B 34.3
(-2.9)
A 		32.2
(-3)
P 		56.1
(-1.4)
A 		103
(1.7)
P 		121.8
(3)
P 		55.9
(-1.4)
P 		90
C 73.9
(-0.1)
A 		48.7
(-1.4)
A 		44.7
(-1.6)
A 		137.3
(3)
P 		62.1
(-0.7)
P 		16.1
(-3)
A 		121
avr 52.9
(-2.5) 		63.9
(-1.7) 		56.7
(-2.2) 		125
(3) 		107.9
(1.7) 		46.7
(-3) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 21.2
(3)
A 		17.1
(0.1)
P 		17.6
(0.4)
P 		12.8
(-3)
M 		8
B 16.3
(3)
A 		10
(0.4)
A 		12.1
(1.3)
A 		1.9
(-3)
A 		14
C 8.5
(-3)
A 		21.1
(3)
M 		13.1
(-0.8)
A 		16.3
(0.7)
P 		13
avr 15.3
(2.2) 		16.1
(3) 		14.3
(1.1) 		10.3
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 9.3
(-3)
A 		39.4
(2.5)
A 		15.1
(-1.9)
P 		34.1
(1.5)
P 		42.2
(3)
P 		16.5
(-1.7)
A 		33
B 11.9
(-2.8)
A 		10.7
(-3)
P 		13.6
(-2.6)
A 		27.3
(-0.4)
P 		49.5
(3)
P 		20.8
(-1.4)
P 		39
C 27.4
(2.9)
A 		14.9
(-0.4)
A 		11.4
(-1.4)
A 		27.6
(3)
P 		20.1
(1)
P 		5.4
(-3)
A 		22
avr 16.2
(-2.3) 		21.7
(-0.9) 		13.4
(-3) 		29.7
(1.1) 		37.3
(3) 		14.2
(-2.8) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180482_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17958
Sequence Type Exemplar sequence
Representative Public ID K03A11.4 NCBI
Target Description K03A11.4 /REP_DB=WormBase Gene ID /WP=CE06074 /TR=Q21167 /GB=CAB00864.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077769
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000007879 ENSEMBL cdna:SNAP chromosome:CEL140:X:13079356:13081965:1 None
NM_077769 NCBI Caenorhabditis elegans K03A11.4 (K03A11.4) mRNA, complete cds. None
K03A11.4 ENSEMBL cdna:known chromosome:CEL140:X:13078092:13081965:1 gene:K03A11.4 None
GENEFINDER00000007880 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13078092:13081957:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13078091-13081965(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K03A11.4
Entrez Gene 186918 Entrez gene
SwissProt Q21167 EMBL-EBI
WormBase CE34048 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00864 Hypothetical protein K03A11.4 [Caenorhabditis elegans] ref|NP_510170.2| K03A11.4 [Caenorhabditis elegans] 0.0
blast CAA93678 Hypothetical protein R03G8.3 [Caenorhabditis elegans] ref|NP_510174.2| R03G8.3 [Caenorhabditis elegans] 0.0
blast CAE61382 Hypothetical protein CBG05229 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004245 EMBL-EBI Protein of unknown function DUF229 1.3E-119
Pfam IPR004245 EMBL-EBI Protein of unknown function DUF229 2.1E-83
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510170.2 1 13-35
K03A11.4 1 13-35
GENEFINDER00000007880 1 13-35
Sequence
Target Sequence 
>C. ELEGANS:180482_AT
agcgcttgatgaatcctttgtctttattcttggagatcatggtcttcggttcggagacta
ccaatccgccaatagtttctctgagactatgccacgtgagattccaggagagaaaggatc
atcatacattcgaaaacaaccatcaactccaagaaattgtcggaatatgccggtgcccct
acaatactgcatatgtcaattcaaaaaaagtaaacttccgaggtattgtcttttcaactc
atttcagacttttaatcctgtattcacaacatctttattagcatacgatgataaattcaa
aggagcaacactgtattccgttacagctgtaatgaaggaaccgagtaatgcagagttcaa
gggaaatgtgaaaattatgaatggagagatcaaagtactgggaatggtcgagcgtagcaa
caagtacggaaaaacggcggactgtatgaaatccgaacatcatcgtccctactgctactg
tgcagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCGCTTGATGAATCCTTTGTCTTT 297 81 1077 Antisense
ATGGTCTTCGGTTCGGAGACTACCA 345 49 1115 Antisense
CTACCAATCCGCCAATAGTTTCTCT 659 223 1134 Antisense
GAGACTATGCCACGTGAGATTCCAG 331 393 1159 Antisense
AATTGTCGGAATATGCCGGTGCCCC 192 177 1231 Antisense
GGTGCCCCTACAATACTGCATATGT 462 501 1248 Antisense
GGTATTGTCTTTTCAACTCATTTCA 257 505 1298 Antisense
AGACTTTTAATCCTGTATTCACAAC 389 69 1322 Antisense
AAGGAGCAACACTGTATTCCGTTAC 336 159 1376 Antisense
TGAAATCCGAACATCATCGTCCCTA 541 571 1523 Antisense
TCGTCCCTACTGCTACTGTGCAGAT 430 605 1539 Antisense
Sequence Source Affymetrix Proprietary Database