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[180481_s_at]

Description D1054.9B /REP_DB=WormBase Gene ID /WP=CE20626 /TR=Q9XVV1 /GB=CAA98447.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 49      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 345
1 2 3 4 range
A 14.4
(-3)
A 		276.3
(1.9)
P 		337.4
(3)
P 		60.4
(-2.1)
A 		323
B 57.1
(-3)
A 		358.4
(3)
P 		268.5
(1.2)
P 		64.4
(-2.9)
A 		301
C 13.7
(-3)
A 		153.3
(-0.1)
P 		302
(3)
P 		52.1
(-2.2)
A 		288
avr 28.4
(-3) 		262.7
(2.1) 		302.6
(3) 		59
(-2.3) 		274

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 233
1 2 3 4 5 6 range
A 106.8
(-2.5)
A 		274.5
(3)
P 		92
(-3)
P 		154.7
(-0.9)
P 		154.6
(-0.9)
P 		121
(-2)
P 		183
B 41.8
(-3)
A 		115.2
(0.9)
P 		154.8
(3)
P 		121.6
(1.2)
P 		139.5
(2.2)
P 		86.7
(-0.6)
A 		113
C 106.8
(-3)
A 		186.5
(3)
P 		147.6
(0.1)
P 		126.9
(-1.5)
P 		135.6
(-0.8)
P 		106.4
(-3)
P 		80
avr 85.1
(-3) 		192.1
(3) 		131.5
(-0.4) 		134.4
(-0.2) 		143.2
(0.3) 		104.7
(-1.9) 		107
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 5.2
(-3)
A 		60
(1)
P 		88.2
(3)
P 		8.8
(-2.7)
A 		83
B 18.2
(-2.6)
A 		88.5
(3)
P 		62.2
(0.9)
P 		13.7
(-3)
A 		75
C 4.5
(-3)
A 		44.1
(-0.6)
P 		105.2
(3)
P 		8.8
(-2.7)
A 		101
avr 9.3
(-3) 		64.2
(1.3) 		85.2
(3) 		10.4
(-2.9) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 19.7
(-3)
A 		97.6
(3)
P 		20
(-3)
P 		39.2
(-1.5)
P 		46.7
(-0.9)
P 		29.5
(-2.2)
P 		78
B 14.6
(-3)
A 		38.3
(0.4)
P 		37.6
(0.3)
P 		32.2
(-0.5)
P 		56.7
(3)
P 		32.3
(-0.5)
A 		42
C 39.6
(-0.3)
A 		56.9
(3)
P 		37.6
(-0.7)
P 		25.5
(-3)
P 		43.9
(0.5)
P 		35.6
(-1.1)
P 		31
avr 24.6
(-3) 		64.3
(3) 		31.7
(-1.9) 		32.3
(-1.8) 		49.1
(0.7) 		32.5
(-1.8) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180481_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12585
Sequence Type Exemplar sequence
Representative Public ID D1054.9B NCBI
Target Description D1054.9B /REP_DB=WormBase Gene ID /WP=CE20626 /TR=Q9XVV1 /GB=CAA98447.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073356(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073356 NCBI Caenorhabditis elegans D1054.9b (D1054.9) mRNA, complete cds. 11/11 A 
SNAP00000017222 ENSEMBL cdna:SNAP chromosome:CEL140:V:10788538:10793091:-1 11/11 None
GENEFINDER00000017240 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10788538:10795396:-1 11/11 None
D1054.9b ENSEMBL cdna:known chromosome:CEL140:V:10788447:10793637:-1 gene:D1054.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179495 5 1 NM_001028574 182009_s_at (9)
NM_001028575 182009_s_at (9)
NM_073355 182009_s_at (11)
NM_073356 180481_s_at (11), 182009_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10788537-10792427(-) 95.94 100.0
Public Domain and Genome References
Ensembl D1054.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE64892 Hypothetical protein CBG09705 [Caenorhabditis briggsae] 0.0
blast CAE64892 Hypothetical protein CBG09705 [Caenorhabditis briggsae] 1.0E-179
blast CAA98447 Hypothetical protein D1054.9b [Caenorhabditis elegans] ref|NP_505757.2| D1054.9b [Caenorhabditis elegans] 1.0E-177
blast CAA98444 Hypothetical protein D1054.9a [Caenorhabditis elegans] ref|NP_505756.2| D1054.9a [Caenorhabditis elegans] 1.0E-158
blast CAI79164 Hypothetical protein D1054.9d [Caenorhabditis elegans] ref|NP_001023745.1| D1054.9d [Caenorhabditis elegans] 1.0E-149
blast CAA98447 Hypothetical protein D1054.9b [Caenorhabditis elegans] ref|NP_505757.2| D1054.9b [Caenorhabditis elegans] 1.0E-127
blast CAA98447 Hypothetical protein D1054.9b [Caenorhabditis elegans] ref|NP_505757.2| D1054.9b [Caenorhabditis elegans] 1.0E-125
blast CAA98447 Hypothetical protein D1054.9b [Caenorhabditis elegans] ref|NP_505757.2| D1054.9b [Caenorhabditis elegans] 1.0E-120
blast CAA98444 Hypothetical protein D1054.9a [Caenorhabditis elegans] ref|NP_505756.2| D1054.9a [Caenorhabditis elegans] 1.0E-109
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000017240 2 5-22,430-452
Sequence
Target Sequence 
>C. ELEGANS:180481_S_AT
acaattgaggacaggccttgatcgtggtgtaaaagctgttcgtcagagtgccgaaagctc
agtcacccacttcaattatggtccacaaccacctcaaccccagcctgttcaaatcccata
tcaccgtcaacatcatcatcatccagctgtgcatcgttatacacctggaccaatgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAATTGAGGACAGGCCTTGATCGT 373 113 1746 Antisense
GGACAGGCCTTGATCGTGGTGTAAA 196 525 1754 Antisense
TCGTGGTGTAAAAGCTGTTCGTCAG 57 605 1767 Antisense
AAAGCTGTTCGTCAGAGTGCCGAAA 143 125 1777 Antisense
GTCAGAGTGCCGAAAGCTCAGTCAC 76 465 1787 Antisense
GCTCAGTCACCCACTTCAATTATGG 97 301 1802 Antisense
GTCACCCACTTCAATTATGGTCCAC 503 465 1807 Antisense
TCAATTATGGTCCACAACCACCTCA 308 633 1817 Antisense
ACATCATCATCATCCAGCTGTGCAT 523 105 1875 Antisense
ATCATCCAGCTGTGCATCGTTATAC 542 29 1883 Antisense
ATCGTTATACACCTGGACCAATGAA 380 35 1898 Antisense
Sequence Source Affymetrix Proprietary Database