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[180480_at]

Description T27E4.5 /REP_DB=WormBase Gene ID /WP=CE28496 /TR=Q23053 /GB=AAB04836.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 25      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 11.7
(-3)
A 		47
(0.2)
A 		24.4
(-1.9)
A 		78
(3)
A 		66
B 16.7
(-1.9)
A 		22.9
(0.6)
A 		28.9
(3)
A 		13.9
(-3)
A 		15
C 16.4
(-3)
A 		22.7
(-1.7)
A 		19
(-2.5)
A 		46.2
(3)
A 		30
avr 14.9
(-3) 		30.9
(0.1) 		24.1
(-1.2) 		46
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 7.3
(-3)
A 		15.6
(-2)
A 		55.6
(3)
A 		8.7
(-2.8)
A 		46.6
(1.9)
A 		20.4
(-1.4)
A 		48
B 21.9
(-1.1)
A 		54.8
(3)
A 		9.4
(-2.7)
A 		25.1
(-0.7)
A 		17.1
(-1.7)
A 		6.8
(-3)
A 		48
C 12.9
(-2.4)
A 		68.6
(3)
A 		11
(-2.6)
A 		7.1
(-3)
A 		13.9
(-2.3)
A 		12.8
(-2.4)
A 		62
avr 14
(-2.9) 		46.3
(3) 		25.3
(-0.8) 		13.6
(-2.9) 		25.9
(-0.7) 		13.3
(-3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 4.3
(-3)
A 		10.2
(2)
A 		6.4
(-1.2)
A 		11.4
(3)
A 		7
B 5.3
(0.7)
A 		5.7
(1.4)
A 		6.7
(3)
A 		3
(-3)
A 		4
C 5.4
(-3)
A 		6.5
(-0.3)
A 		6.6
(-0)
A 		7.8
(3)
A 		2
avr 5
(-3) 		7.5
(3) 		6.6
(0.8) 		7.4
(2.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 1.3
(-3)
A 		5.5
(-1)
A 		12.1
(2.1)
A 		2.2
(-2.6)
A 		14.1
(3)
A 		5
(-1.3)
A 		13
B 7.6
(-1)
A 		18.2
(3)
A 		2.3
(-3)
A 		6.7
(-1.3)
A 		6.9
(-1.3)
A 		2.5
(-2.9)
A 		16
C 4.8
(-2)
A 		20.9
(3)
A 		2.8
(-2.6)
A 		1.4
(-3)
A 		4.5
(-2)
A 		4.3
(-2.1)
A 		20
avr 4.6
(-2.4) 		14.9
(3) 		5.7
(-1.8) 		3.4
(-3) 		8.5
(-0.3) 		3.9
(-2.7) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180480_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11592
Sequence Type Exemplar sequence
Representative Public ID T27E4.5 NCBI
Target Description T27E4.5 /REP_DB=WormBase Gene ID /WP=CE28496 /TR=Q23053 /GB=AAB04836.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072950(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072950 NCBI Caenorhabditis elegans T27E4.5 (T27E4.5) mRNA, complete cds. 9/11 None
GENEFINDER00000044639 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9071112:9072281:-1 9/11 None
T27E4.5 ENSEMBL cdna:known chromosome:CEL140:V:9071048:9072281:-1 gene:T27E4.5 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000044630 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9071046-9071900(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T27E4.5
Entrez Gene 179282 Entrez gene
SwissProt Q23053 EMBL-EBI
WormBase CE35787 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04836 Hypothetical protein T27E4.5 [Caenorhabditis elegans] ref|NP_505351.2| T27E4.5 [Caenorhabditis elegans] 1.0E-112
blast AAB04836 Hypothetical protein T27E4.5 [Caenorhabditis elegans] ref|NP_505351.2| T27E4.5 [Caenorhabditis elegans] 1.0E-108
Sequence
Target Sequence 
>C. ELEGANS:180480_AT
atgtcgcctcttgcaaagataattgctaacattgaaaaaaggaatgaaaaagtgaaaatg
actaagaaattcaaaaagtttggagttccgcttccaatgtgctcatcgaaccttgaaaca
atgtcgaatggacatcacatgttcttctgggtacagttattcaagacatgcccgtctcaa
cttcaaatggcatacttctgccagaaaacttccacagccaggaaaacagtgaagccgtgt
aaaacagatcaagactgcatgttctcaaatgtgcaaaaatgttgtgacgctggttgtggt
tttaacgtatgcgtcgtggcaagtggaaattacacacaaaatagtaagcaatttctctca
tcttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCGCCTCTTGCAAAGATAATTG 238 49 13 Antisense
GTTTGGAGTTCCGCTTCCAATGTGC 218 451 90 Antisense
TCCAATGTGCTCATCGAACCTTGAA 620 587 105 Antisense
GGACATCACATGTTCTTCTGGGTAC 677 525 142 Antisense
TACAGTTATTCAAGACATGCCCGTC 510 643 164 Antisense
CATGCCCGTCTCAACTTCAAATGGC 351 211 179 Antisense
CTGCCAGAAAACTTCCACAGCCAGG 267 235 210 Antisense
ACAGATCAAGACTGCATGTTCTCAA 54 109 256 Antisense
GTTGTGACGCTGGTTGTGGTTTTAA 400 437 293 Antisense
GTGGTTTTAACGTATGCGTCGTGGC 659 487 308 Antisense
TAGTAAGCAATTTCTCTCATCTTCC 79 655 354 Antisense
Sequence Source Affymetrix Proprietary Database