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[180478_at]

Description F52E1.2 /REP_DB=WormBase Gene ID /WP=CE04630 /TR=Q20665 /GB=AAB37037.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 35      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 81      6grp_total > 35      4grp_total > 38      6grp_highest_sub > De      6grp_high1_sub > 02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 407
1 2 3 4 range
A 481.6
(3)
P 		285.7
(-1)
P 		191.1
(-3)
P 		228.4
(-2.2)
P 		291
B 598.3
(3)
P 		300.7
(-1.8)
P 		227.2
(-3)
P 		305.5
(-1.7)
P 		371
C 571.2
(3)
P 		237.3
(-2.7)
P 		219.3
(-3)
P 		368.8
(-0.5)
P 		352
avr 550.4
(3) 		274.6
(-1.9) 		212.5
(-3) 		300.9
(-1.4) 		338

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 220
1 2 3 4 5 6 range
A 295.3
(1.1)
P 		363.4
(3)
P 		273.3
(0.5)
P 		239.4
(-0.4)
P 		143.6
(-3)
P 		205.5
(-1.3)
P 		220
B 261.4
(0.3)
P 		340.6
(3)
P 		245.7
(-0.3)
P 		255.4
(0.1)
P 		166.1
(-3)
P 		217.9
(-1.2)
P 		175
C 291.5
(3)
P 		261.9
(1.2)
P 		278.7
(2.2)
P 		250.8
(0.5)
P 		192.7
(-3)
P 		228.9
(-0.8)
P 		99
avr 282.7
(1.5) 		322
(3) 		265.9
(0.8) 		248.5
(0.1) 		167.5
(-3) 		217.4
(-1.1) 		155
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 157
1 2 3 4 range
A 175.3
(3)
P 		62
(-1.8)
P 		50
(-2.3)
P 		33.4
(-3)
P 		142
B 190.8
(3)
P 		74.3
(-2.1)
P 		52.6
(-3)
P 		65.1
(-2.5)
P 		138
C 189.1
(3)
P 		68.2
(-2.7)
P 		76.4
(-2.3)
P 		62.2
(-3)
P 		127
avr 185.1
(3) 		68.2
(-2.3) 		59.7
(-2.7) 		53.6
(-3) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 54.4
(-2.2)
P 		129.2
(3)
P 		59.5
(-1.9)
P 		60.7
(-1.8)
P 		43.3
(-3)
P 		50
(-2.5)
P 		86
B 91
(0.5)
P 		113.4
(3)
P 		59.7
(-3)
P 		67.6
(-2.1)
P 		67.5
(-2.1)
P 		81.3
(-0.6)
P 		54
C 108
(3)
P 		79.9
(0.1)
P 		70.9
(-0.9)
P 		50.4
(-3)
P 		62.4
(-1.8)
P 		76.6
(-0.3)
P 		58
avr 84.5
(0.2) 		107.5
(3) 		63.4
(-2.3) 		59.6
(-2.8) 		57.7
(-3) 		69.3
(-1.6) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180478_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12040
Sequence Type Exemplar sequence
Representative Public ID F52E1.2 NCBI
Target Description F52E1.2 /REP_DB=WormBase Gene ID /WP=CE04630 /TR=Q20665 /GB=AAB37037.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072769(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072769 NCBI Caenorhabditis elegans F52E1.2 (F52E1.2) mRNA, complete cds. 10/11 None
SNAP00000034426 ENSEMBL cdna:SNAP chromosome:CEL140:V:8413270:8414359:1 11/11 None
GENEFINDER00000034445 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8413270:8414359:1 10/11 None
F52E1.2 ENSEMBL cdna:known chromosome:CEL140:V:8413270:8414359:1 gene:F52E1.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8413270-8414360(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F52E1.2
Entrez Gene 186111 Entrez gene
SwissProt Q20665 EMBL-EBI
WormBase CE35320 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37037 Hypothetical protein F52E1.2 [Caenorhabditis elegans] ref|NP_505170.2| F52E1.2 [Caenorhabditis elegans] 2.0E-91
blast AAB37037 Hypothetical protein F52E1.2 [Caenorhabditis elegans] ref|NP_505170.2| F52E1.2 [Caenorhabditis elegans] 1.0E-89
blast AAB37037 Hypothetical protein F52E1.2 [Caenorhabditis elegans] ref|NP_505170.2| F52E1.2 [Caenorhabditis elegans] 2.0E-88
blast CAE66047 Hypothetical protein CBG11247 [Caenorhabditis briggsae] 9.0E-59
blast CAE66047 Hypothetical protein CBG11247 [Caenorhabditis briggsae] 7.0E-57
blast CAE66047 Hypothetical protein CBG11247 [Caenorhabditis briggsae] 1.0E-55
blast CAE66053 Hypothetical protein CBG11254 [Caenorhabditis briggsae] 4.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 1.6E-13
Pfam IPR001304 EMBL-EBI C-type lectin 1.6E-13
Pfam IPR001304 EMBL-EBI C-type lectin 9.5E-13
Sequence
Target Sequence 
>C. ELEGANS:180478_AT
gacgaatcccactacgatttctacaactacacttttgacaacgacaacaccagaatacgt
gacatttacaatcgttgatcctggagcaatgctcattgattgtcctggtggatgtccaac
cgggtggcaatatctcaattcgaaatgctataaggttcttattcattttcattgtctgtc
tttgaaagttcaattacagaaattcgatgcagctgtcacgtacgcgggtgccacatctgc
ttgtgctgctcagggtgcagaacttgttacaattgacagcttcgacgagaatgatgcttt
gagaaaagcatttgacactaatgctctagttgacgagactaaggaaacatggatcggctt
gaaatcattaagtggtgcatggcagtgggctgatggttcttcagcaacttacactaattg
ggctccatcacaaccttcgagcaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGAATCCCACTACGATTTCTACA 631 379 198 Antisense
AATGCTCATTGATTGTCCTGGTGGA 95 167 285 Antisense
TCCTGGTGGATGTCCAACCGGGTGG 211 591 300 Antisense
ACCGGGTGGCAATATCTCAATTCGA 168 87 316 Antisense
TATTCATTTTCATTGTCTGTCTTTG 585 663 357 Antisense
AATTCGATGCAGCTGTCACGTACGC 85 177 398 Antisense
TCTGCTTGTGCTGCTCAGGGTGCAG 546 609 433 Antisense
GCATGGCAGTGGGCTGATGGTTCTT 82 311 574 Antisense
GATGGTTCTTCAGCAACTTACACTA 77 407 589 Antisense
AACTTACACTAATTGGGCTCCATCA 586 139 603 Antisense
GCTCCATCACAACCTTCGAGCAATG 199 299 619 Antisense
Sequence Source Affymetrix Proprietary Database