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[180477_at]

Description C31G12.4 /REP_DB=WormBase Gene ID /WP=CE15663 /TR=O17632 /GB=CAB03935.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 33      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 18.3
(-1.3)
A 		15.7
(-1.8)
A 		39
(3)
A 		9.8
(-3)
A 		29
B 6.8
(-3)
A 		25.3
(1.9)
A 		29.3
(3)
A 		8.2
(-2.6)
A 		23
C 4.9
(-3)
A 		49.2
(0.2)
A 		26.5
(-1.4)
A 		87.1
(3)
A 		82
avr 10
(-3) 		30.1
(1.8) 		31.6
(2.2) 		35
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 5.7
(-2.8)
A 		7.9
(-2.3)
A 		5.4
(-2.8)
A 		36.7
(3)
A 		4.4
(-3)
A 		5.1
(-2.9)
A 		32
B 5.1
(-2.5)
A 		3
(-3)
A 		9
(-1.7)
A 		29.7
(3)
A 		6.2
(-2.3)
A 		13.9
(-0.6)
A 		27
C 6.3
(-1.8)
A 		4.6
(-3)
A 		7.7
(-0.8)
A 		8.6
(-0.2)
A 		9.6
(0.5)
A 		13.2
(3)
A 		9
avr 5.7
(-2.8) 		5.2
(-3) 		7.4
(-2.3) 		25
(3) 		6.7
(-2.5) 		10.7
(-1.3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 6.7
(0.6)
A 		3.4
(-1.6)
A 		10.2
(3)
A 		1.4
(-3)
A 		9
B 2.2
(-2.4)
A 		6.2
(2.3)
A 		6.8
(3)
A 		1.7
(-3)
A 		5
C 1.6
(-3)
A 		14.1
(2.7)
A 		9.2
(0.5)
A 		14.7
(3)
A 		13
avr 3.5
(-3) 		7.9
(2.1) 		8.7
(3) 		5.9
(-0.2) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.1
(-3)
A 		2.8
(-1.8)
A 		1.2
(-2.9)
A 		9.3
(3)
A 		1.3
(-2.9)
A 		1.2
(-2.9)
A 		8
B 1.8
(-2.3)
A 		1
(-3)
A 		2.2
(-2)
A 		7.9
(3)
A 		2.5
(-1.7)
A 		5.2
(0.7)
A 		7
C 2.3
(-1.2)
A 		1.4
(-3)
A 		1.9
(-2)
A 		1.7
(-2.4)
A 		3.1
(0.4)
A 		4.4
(3)
A 		3
avr 1.7
(-3) 		1.7
(-3) 		1.8
(-2.9) 		6.3
(3) 		2.3
(-2.2) 		3.6
(-0.5) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180477_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14592
Sequence Type Exemplar sequence
Representative Public ID C31G12.4 NCBI
Target Description C31G12.4 /REP_DB=WormBase Gene ID /WP=CE15663 /TR=O17632 /GB=CAB03935.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075151(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075151 NCBI Caenorhabditis elegans C31G12.4 (C31G12.4) mRNA, complete cds. 11/11 None
SNAP00000007427 ENSEMBL cdna:SNAP chromosome:CEL140:V:18179243:18181306:-1 11/11 None
GENEFINDER00000007432 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18176631:18181306:-1 11/11 None
C31G12.4 ENSEMBL cdna:known chromosome:CEL140:V:18179348:18181306:-1 gene:C31G12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18179347-18181306(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C31G12.4
Entrez Gene 183093 Entrez gene
SwissProt O17632 EMBL-EBI
WormBase CE15663 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03935 Hypothetical protein C31G12.4 [Caenorhabditis elegans] ref|NP_507552.1| C31G12.4 [Caenorhabditis elegans] 1.0E-128
blast CAB03935 Hypothetical protein C31G12.4 [Caenorhabditis elegans] ref|NP_507552.1| C31G12.4 [Caenorhabditis elegans] 2.0E-90
blast CAE70983 Hypothetical protein CBG17803 [Caenorhabditis briggsae] 1.0E-9
blast CAE70983 Hypothetical protein CBG17803 [Caenorhabditis briggsae] 2.0E-9
blast CAE71651 Hypothetical protein CBG18623 [Caenorhabditis briggsae] 2.0E-9
Sequence
Target Sequence 
>C. ELEGANS:180477_AT
gacaagttccttgacgcgatttcagcgtcttgacataagagtcttcaatttttcagacac
tctgaaaagcacatcccgctcggagcgggctcttgtgaacaccggtcaattctacgtgcc
acgtgtcagatttggataccgaaactcaaatgcgttgattatgatctacaccggaattga
gcagtttttgagattggagttcaccacttgcatcgaaggaactatgattcataaatccga
atccacatgggaccgatcagaatgtctgacaaaaatggtgtcaatcaaggacccattaca
atgtgcactttcaatcttcaagtccttgctctgcggagattcgataacgattggtgctat
tgaatgggatgttgacccgtccaaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAAGTTCCTTGACGCGATTTCAG 536 363 81 Antisense
GACACTCTGAAAAGCACATCCCGCT 528 367 136 Antisense
GCTCGGAGCGGGCTCTTGTGAACAC 620 297 158 Antisense
GAACACCGGTCAATTCTACGTGCCA 152 351 177 Antisense
CTACGTGCCACGTGTCAGATTTGGA 691 225 192 Antisense
GAGTTCACCACTTGCATCGAAGGAA 95 399 277 Antisense
AATCCGAATCCACATGGGACCGATC 120 169 314 Antisense
GGTGTCAATCAAGGACCCATTACAA 565 499 357 Antisense
GCACTTTCAATCTTCAAGTCCTTGC 686 315 385 Antisense
AGTCCTTGCTCTGCGGAGATTCGAT 35 61 401 Antisense
AATGGGATGTTGACCCGTCCAAAGA 540 163 443 Antisense
Sequence Source Affymetrix Proprietary Database