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[180476_at]

Description K07E1.1 /REP_DB=WormBase Gene ID /WP=CE02007 /TR=Q09407 /GB=AAC46708.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 94      4grp_highest_8_8 > 0      4grp_high_8_8 > 45      6grp_highest_nonorm > 49      6grp_total > 84      4grp_total > 43      6grp_highest_sub > 04_05_06      6grp_high1_sub > In      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1034
1 2 3 4 range
A 2673.8
(-1.7)
P 		3435.3
(3)
P 		2901.9
(-0.3)
P 		2456.6
(-3)
P 		979
B 2858.6
(-2.5)
P 		3214.6
(3)
P 		2956.4
(-1)
P 		2825.7
(-3)
P 		389
C 2707.6
(-2.3)
P 		3490.7
(3)
P 		2903.9
(-1)
P 		2600.3
(-3)
P 		890
avr 2746.7
(-2) 		3380.2
(3) 		2920.7
(-0.7) 		2627.5
(-3) 		753

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4324
1 2 3 4 5 6 range
A 2720.8
(-3)
P 		2765.6
(-2.9)
P 		4621
(0.2)
P 		4129.5
(-0.6)
P 		6292.9
(3)
P 		5109.3
(1)
P 		3572
B 1968.5
(-3)
P 		2867.1
(-1.5)
P 		4862.2
(1.9)
P 		4348.1
(1)
P 		5506.4
(3)
P 		5027.5
(2.2)
P 		3538
C 2051.6
(-3)
P 		3206.2
(-0.7)
P 		4735.3
(2.3)
P 		4865
(2.5)
P 		4395.2
(1.6)
P 		5112.6
(3)
P 		3061
avr 2247
(-3) 		2946.3
(-1.7) 		4739.5
(1.7) 		4447.5
(1.2) 		5398.2
(3) 		5083.1
(2.4) 		3151
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 653
1 2 3 4 range
A 973.5
(3)
P 		745.7
(0.8)
P 		758.6
(0.9)
P 		359.6
(-3)
P 		614
B 911.6
(3)
P 		793.9
(0.7)
P 		685.1
(-1.4)
P 		602.2
(-3)
P 		309
C 896.3
(1.8)
P 		1003.6
(2.9)
P 		1012.1
(3)
P 		438.4
(-3)
P 		574
avr 927.1
(3) 		847.7
(2) 		818.6
(1.6) 		466.7
(-3) 		460

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1736
1 2 3 4 5 6 range
A 501.6
(-3)
P 		983.6
(-0.9)
P 		1006.4
(-0.8)
P 		1047.3
(-0.7)
P 		1898.9
(3)
P 		1244
(0.2)
P 		1397
B 684.9
(-3)
P 		954.3
(-2)
P 		1180.7
(-1.1)
P 		1151.7
(-1.2)
P 		2237.2
(3)
P 		1874.7
(1.6)
P 		1552
C 760.4
(-3)
P 		978.3
(-1.6)
P 		1205.2
(-0.2)
P 		978.4
(-1.6)
P 		1422.2
(1.2)
P 		1711.5
(3)
P 		951
avr 649
(-3) 		972.1
(-1.4) 		1130.8
(-0.6) 		1059.1
(-1) 		1852.8
(3) 		1610.1
(1.8) 		1204
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180476_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4936
Sequence Type Exemplar sequence
Representative Public ID K07E1.1 NCBI
Target Description K07E1.1 /REP_DB=WormBase Gene ID /WP=CE02007 /TR=Q09407 /GB=AAC46708.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062403(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062403 NCBI Caenorhabditis elegans K07E1.1 (K07E1.1) mRNA, complete cds. 11/11 None
SNAP00000038053 ENSEMBL cdna:SNAP chromosome:CEL140:II:4551088:4551897:1 10/11 None
GENEFINDER00000038054 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4551088:4551897:1 10/11 None
K07E1.1 ENSEMBL cdna:known chromosome:CEL140:II:4550855:4552164:1 gene:K07E1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4550853-4551896(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K07E1.1
Entrez Gene 173790 Entrez gene
SwissProt Q09407 EMBL-EBI
WormBase CE02007 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46708 Hypothetical protein K07E1.1 [Caenorhabditis elegans] ref|NP_494804.1| K07E1.1 [Caenorhabditis elegans] 1.0E-107
blast AAC46708 Hypothetical protein K07E1.1 [Caenorhabditis elegans] ref|NP_494804.1| K07E1.1 [Caenorhabditis elegans] 6.0E-91
blast CAE67866 Hypothetical protein CBG13458 [Caenorhabditis briggsae] 9.0E-87
blast CAE67866 Hypothetical protein CBG13458 [Caenorhabditis briggsae] 2.0E-86
blast AAC46708 Hypothetical protein K07E1.1 [Caenorhabditis elegans] ref|NP_494804.1| K07E1.1 [Caenorhabditis elegans] 3.0E-85
blast CAE67866 Hypothetical protein CBG13458 [Caenorhabditis briggsae] 4.0E-81
blast AAB37884 Hypothetical protein T01D1.4 [Caenorhabditis elegans] ref|NP_493676.1| T01D1.4 [Caenorhabditis elegans] 2.0E-38
blast AAB37884 Hypothetical protein T01D1.4 [Caenorhabditis elegans] ref|NP_493676.1| T01D1.4 [Caenorhabditis elegans] 4.0E-38
Protein Domains
Database ID Description E-Value
Pfam IPR004313 EMBL-EBI Acireductone dioxygenase, ARD 1.2E-79
Pfam IPR004313 EMBL-EBI Acireductone dioxygenase, ARD 1.2E-79
Pfam IPR004313 EMBL-EBI Acireductone dioxygenase, ARD 4.3E-71
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494804.1 1 36-58
K07E1.1 1 36-58
Sequence
Target Sequence 
>C. ELEGANS:180476_AT
ttttctcctgctttcagttttgatttccagttaaaaatggtgcaaatctggcaaatggag
ccatacccatgtggtgacccaagactcccacatcatcttttcccaccaaagaagatcact
ccagatgagttgagcaagagaaccggaacactttactggaagttggacacacttgatcaa
gttgctcttgccaagcgattgacaaccttgaagctggagcatagtttcaaaaaagaggat
attttcactttggacgccgagacaactgctaacttcgatgataagatcgaggagttattc
gaggaatcatcggttccatttgagcaggcaagaatgatcattgagggtacagcttattat
gatgtggaggataagaatggtcaatgggtccgtattttctgcgagtacggggatttgatt
ttgattccagccaacacttgcttcagattcacaaccacaccacataactttgtcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCTCCTGCTTTCAGTTTTGATT 485 677 166 Antisense
TACCCATGTGGTGACCCAAGACTCC 317 645 229 Antisense
CACATCATCTTTTCCCACCAAAGAA 103 197 254 Antisense
GCTCTTGCCAAGCGATTGACAACCT 262 299 349 Antisense
GGATATTTTCACTTTGGACGCCGAG 119 511 402 Antisense
GACGCCGAGACAACTGCTAACTTCG 277 381 418 Antisense
GAATCATCGGTTCCATTTGAGCAGG 710 325 469 Antisense
TGGTCAATGGGTCCGTATTTTCTGC 648 551 543 Antisense
ATTCCAGCCAACACTTGCTTCAGAT 483 7 589 Antisense
CTTGCTTCAGATTCACAACCACACC 217 219 602 Antisense
CAACCACACCACATAACTTTGTCAA 448 185 617 Antisense
Sequence Source Affymetrix Proprietary Database