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[180475_s_at]

Description T16G12.3 /REP_DB=WormBase Gene ID /WP=CE03661 /TR=Q22532 /GB=CAA82972.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 33      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 10.9
(-3)
A 		83
(2)
P 		46.5
(-0.5)
A 		97.3
(3)
A 		86
B 39.7
(-3)
A 		47.5
(-2.1)
A 		92.3
(3)
M 		54.8
(-1.3)
A 		53
C 6
(-3)
A 		89.8
(3)
A 		68
(1.4)
A 		30.6
(-1.2)
A 		84
avr 18.9
(-3) 		73.4
(3) 		68.9
(2.5) 		60.9
(1.6) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 31.3
(-2.2)
A 		40.2
(-1.8)
A 		12.7
(-3)
A 		67.6
(-0.6)
P 		91.2
(0.4)
P 		150
(3)
P 		137
B 8.7
(-3)
A 		35.4
(-1)
A 		73.3
(1.8)
P 		65.1
(1.2)
A 		90
(3)
P 		66.7
(1.3)
P 		81
C 54.2
(-1.1)
A 		40.8
(-3)
A 		42.8
(-2.7)
A 		47.2
(-2.1)
A 		60
(-0.2)
P 		82.2
(3)
P 		41
avr 31.4
(-3) 		38.8
(-2.3) 		42.9
(-2) 		60
(-0.5) 		80.4
(1.3) 		99.6
(3) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 4
(-3)
A 		18
(3)
P 		12.2
(0.5)
A 		14.2
(1.4)
A 		14
B 12.7
(-2.4)
A 		11.7
(-3)
A 		21.4
(3)
M 		11.7
(-3)
A 		10
C 2
(-3)
A 		25.8
(3)
A 		23.7
(2.5)
A 		5.2
(-2.2)
A 		24
avr 6.2
(-3) 		18.5
(2.7) 		19.1
(3) 		10.4
(-1) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 5.8
(-2.5)
A 		14.3
(-1)
A 		2.8
(-3)
A 		17.1
(-0.5)
P 		27.5
(1.4)
P 		36.5
(3)
P 		34
B 3
(-3)
A 		11.8
(-1.4)
A 		17.8
(-0.4)
P 		17.2
(-0.5)
A 		36.6
(3)
P 		24.9
(0.9)
P 		34
C 20.1
(0.5)
A 		12.5
(-2)
A 		10.9
(-2.5)
A 		9.5
(-3)
A 		19.4
(0.3)
P 		27.5
(3)
P 		18
avr 9.6
(-3) 		12.9
(-2) 		10.5
(-2.7) 		14.6
(-1.5) 		27.8
(2.5) 		29.6
(3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180475_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6785
Sequence Type Exemplar sequence
Representative Public ID T16G12.3 NCBI
Target Description T16G12.3 /REP_DB=WormBase Gene ID /WP=CE03661 /TR=Q22532 /GB=CAA82972.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066830(11), NM_078457(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066830 NCBI Caenorhabditis elegans T16G12.3 (T16G12.3) mRNA, complete cds. 11/11 None
NM_078457 NCBI Caenorhabditis elegans F20B4.2 (F20B4.2) mRNA, complete cds. 11/11 None
GENEFINDER00000038828 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11453483:11454766:1 9/11 None
GENEFINDER00000010174 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10051956:10053951:1 11/11 None
SNAP00000010164 ENSEMBL cdna:SNAP chromosome:CEL140:III:10053211:10053951:1 11/11 None
SNAP00000007932 ENSEMBL cdna:SNAP chromosome:CEL140:X:17703764:17704504:-1 11/11 None
GENEFINDER00000007941 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17703764:17705083:-1 11/11 None
ZK1025.1 ENSEMBL cdna:pseudogene chromosome:CEL140:I:11451574:11454766:1 gene:ZK1025.1 9/11 A 
T16G12.3 ENSEMBL cdna:known chromosome:CEL140:III:10051956:10054188:1 gene:T16G12.3 11/11 A 
F20B4.2 ENSEMBL cdna:known chromosome:CEL140:X:17703764:17704777:-1 gene:F20B4.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038815 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title

Ensembl ZK1025.1
T16G12.3
F20B4.2
Entrez Gene 176417 Entrez gene
184708 Entrez gene
SwissProt Q19623 EMBL-EBI
Q22532 EMBL-EBI
WormBase CE07101 Wormbase
CE34094 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA82972 Hypothetical protein T16G12.3 [Caenorhabditis elegans] ref|NP_499231.2| T16G12.3 [Caenorhabditis elegans] 0.0
blast AAC48143 Hypothetical protein F20B4.2 [Caenorhabditis elegans] ref|NP_510858.1| F20B4.2 [Caenorhabditis elegans] 0.0
blast AAC48143 Hypothetical protein F20B4.2 [Caenorhabditis elegans] ref|NP_510858.1| F20B4.2 [Caenorhabditis elegans] 1.0E-163
blast CAA82972 Hypothetical protein T16G12.3 [Caenorhabditis elegans] ref|NP_499231.2| T16G12.3 [Caenorhabditis elegans] 1.0E-163
Sequence
Target Sequence 
>C. ELEGANS:180475_S_AT
gtatgccagcttatctcacttaaaaatcctactttccaaggattatcagactctctcaac
tcaccaggagacaaaaaagtggccgcagaaaagcacacctgcgaagatcgcacacgacgg
ccaacattcccgctcgatgcgttctgcagtaccccgaacgaacaatacgagacaatgcta
ctcatcgcaaaatcacgtactctatcagcccgtatgaacgtcaagatgctccacttcccc
cttggacttcttgctttggaatttgacggcatcgactccgacatgcctaatccagacttc
catgacaatgtacttggatacagagatcctcacacgacgactcctgattcatcatcagat
cacgccgcggccaaccttccaccaggtagaacccgagactacattcctcgaaaggccaag
gcgccctatatcaattatgtacacagtctgtcagtcatggtcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATGCCAGCTTATCTCACTTAAAA 568 455 649 Antisense
CTGCGAAGATCGCACACGACGGCCA 313 235 747 Antisense
GCAAAATCACGTACTCTATCAGCCC 316 319 835 Antisense
GTATGAACGTCAAGATGCTCCACTT 360 455 860 Antisense
CCCTTGGACTTCTTGCTTTGGAATT 291 259 887 Antisense
ATTTGACGGCATCGACTCCGACATG 35 19 909 Antisense
GACATGCCTAATCCAGACTTCCATG 5 371 928 Antisense
TACAGAGATCCTCACACGACGACTC 90 643 967 Antisense
ACGACGACTCCTGATTCATCATCAG 271 93 982 Antisense
GAAAGGCCAAGGCGCCCTATATCAA 146 361 1058 Antisense
GTACACAGTCTGTCAGTCATGGTCG 4 461 1087 Antisense
Sequence Source Affymetrix Proprietary Database