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[180474_at]

Description F07C4.7 /REP_DB=WormBase Gene ID /WP=CE09206 /TR=P91207 /GB=AAG24037.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 51      6grp_total > 07      4grp_total > 52      6grp_cgc > 21      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 343
1 2 3 4 range
A 294.1
(3)
P 		267.5
(2.2)
P 		290.4
(2.9)
P 		85.8
(-3)
A 		208
B 242.7
(2.1)
P 		275.7
(3)
P 		201.3
(1)
P 		48.4
(-3)
P 		227
C 254
(0.3)
P 		391.1
(3)
P 		217.9
(-0.4)
P 		84.5
(-3)
A 		307
avr 263.6
(1.8) 		311.4
(3) 		236.5
(1.1) 		72.9
(-3) 		239

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 425
1 2 3 4 5 6 range
A 283.6
(3)
P 		219
(1.4)
P 		131.3
(-0.9)
P 		127.1
(-1)
P 		78.2
(-2.2)
A 		48.5
(-3)
A 		235
B 364.3
(3)
P 		183.3
(-0.3)
P 		149.5
(-1)
P 		96.8
(-1.9)
P 		39.5
(-3)
A 		65.5
(-2.5)
P 		325
C 464
(3)
P 		171
(-1.3)
P 		212.9
(-0.6)
P 		73
(-2.7)
M 		75
(-2.6)
A 		50.6
(-3)
A 		413
avr 370.6
(3) 		191.1
(-0.4) 		164.6
(-0.9) 		99
(-2.2) 		64.2
(-2.8) 		54.9
(-3) 		316
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 107.1
(3)
P 		58.1
(-0.1)
P 		75.9
(1)
P 		12.6
(-3)
A 		95
B 77.4
(3)
P 		68.1
(2.2)
P 		46.6
(0.2)
P 		10.3
(-3)
P 		67
C 84.1
(1.3)
P 		112.5
(3)
P 		76
(0.8)
P 		14.2
(-3)
A 		98
avr 89.5
(3) 		79.6
(2.2) 		66.2
(1.2) 		12.4
(-3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 52.3
(0.7)
P 		77.9
(3)
P 		28.6
(-1.5)
P 		32.2
(-1.1)
P 		23.6
(-1.9)
A 		11.8
(-3)
A 		66
B 126.8
(3)
P 		61
(-0.6)
P 		36.3
(-1.9)
P 		25.6
(-2.5)
P 		16
(-3)
A 		24.4
(-2.5)
P 		111
C 172
(3)
P 		52.2
(-1.6)
P 		54.2
(-1.5)
P 		14.7
(-3)
M 		24.3
(-2.6)
A 		16.9
(-2.9)
A 		157
avr 117
(3) 		63.7
(-0.2) 		39.7
(-1.7) 		24.2
(-2.6) 		21.3
(-2.8) 		17.7
(-3) 		99
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180474_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11760
Sequence Type Exemplar sequence
Representative Public ID F07C4.7 NCBI
Target Description F07C4.7 /REP_DB=WormBase Gene ID /WP=CE09206 /TR=P91207 /GB=AAG24037.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072569(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072569 NCBI Caenorhabditis elegans F07C4.7 (F07C4.7) mRNA, complete cds. 11/11 None
GENEFINDER00000003407 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7627545:7629059:1 11/11 None
F07C4.7 ENSEMBL cdna:known chromosome:CEL140:V:7627544:7628997:1 gene:F07C4.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003385 7/11 Cross Hyb Matching Probes None
SNAP00000003386 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7627545-7628996(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol grsp-4
Ensembl F07C4.7
Entrez Gene 179146 Entrez gene
SwissProt P91207 EMBL-EBI
WormBase CE09206 Wormbase
Sequence
Target Sequence 
>C. ELEGANS:180474_AT
gtacaaattgaccatcttccttcttgttacccttcttgggctcaccgtcggtcaatgggg
tccaggattcggtgggcctggatttggaggacctggatctggaggaccgggaccacgtgg
cccaggagaatggaataatggcggtggacgtggtggatttggaggaaataacggatggaa
caatggtggtggtggtttcaatggaaatggtggatttaatggaggtggtcgtggaggcgg
acgaggtggaaacggtggatttggagacaacggaggtctgcgtggaggaaatgggggagg
tcgcggtggtaacggaggatttgatgacaacggaggtggacgtggaggaaatggaggagg
tcgcggtggtacaggaggatttggtgacaacggaggcggccgtggaggaaatggaggagg
tcgcggtggaaacggaggaggaaacaatggaggaggccgtggtggaaatggaggaggacg
tccacaaatttctgccggcgaacgtatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACAAATTGACCATCTTCCTTCTT 261 461 15 Antisense
ACCGTCGGTCAATGGGGTCCAGGAT 7 11 58 Antisense
GGGGTCCAGGATTCGGTGGGCCTGG 668 495 71 Antisense
GTGGGCCTGGATTTGGAGGACCTGG 205 487 86 Antisense
GACCTGGATCTGGAGGACCGGGACC 241 383 104 Antisense
GACCACGTGGCCCAGGAGAATGGAA 11 385 125 Antisense
GAGACAACGGAGGTCTGCGTGGAGG 427 393 278 Antisense
GGATTTGGTGACAACGGAGGCGGCC 259 509 391 Antisense
GGAGGCGGCCGTGGAGGAAATGGAG 436 513 406 Antisense
GAGGAGGACGTCCACAAATTTCTGC 684 403 485 Antisense
CAAATTTCTGCCGGCGAACGTATTA 209 193 499 Antisense
Sequence Source Affymetrix Proprietary Database