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[180472_at] 7TM chemoreceptor, srw family

Description ZK1037.7 /REP_DB=WormBase Gene ID /WP=CE16759 /TR=O45989 /GB=CAB03506.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 35      6grp_cgc > 63      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 98.1
(1.3)
A 		110
(2.4)
A 		51.5
(-3)
A 		116.5
(3)
A 		65
B 16.9
(-3)
A 		148.3
(3)
A 		37.6
(-2.1)
A 		21.7
(-2.8)
A 		131
C 18.2
(-2.9)
A 		60.5
(-1)
A 		16.4
(-3)
A 		150.7
(3)
A 		134
avr 44.4
(-2.2) 		106.3
(3) 		35.2
(-3) 		96.3
(2.2) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 23.4
(-1.7)
A 		15
(-2.8)
A 		29.1
(-1)
A 		60.3
(3)
A 		33.9
(-0.4)
A 		13.1
(-3)
A 		47
B 41.3
(-1.9)
A 		132.8
(3)
A 		25.7
(-2.8)
A 		24.9
(-2.8)
A 		25.1
(-2.8)
A 		21.8
(-3)
A 		111
C 23.5
(-2.5)
A 		106.1
(3)
A 		69.6
(0.6)
A 		63.8
(0.2)
A 		16.6
(-3)
A 		19.2
(-2.8)
A 		90
avr 29.4
(-2) 		84.6
(3) 		41.5
(-0.9) 		49.7
(-0.1) 		25.2
(-2.4) 		18
(-3) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 35.7
(3)
A 		23.9
(-0.2)
A 		13.5
(-3)
A 		17
(-2.1)
A 		22
B 5.4
(-2.9)
A 		36.6
(3)
A 		8.7
(-2.2)
A 		4.6
(-3)
A 		32
C 6
(-2.9)
A 		17.4
(0.6)
A 		5.7
(-3)
A 		25.4
(3)
A 		20
avr 15.7
(-0.7) 		26
(3) 		9.3
(-3) 		15.7
(-0.7) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 4.3
(-2.5)
A 		5.3
(-2)
A 		6.3
(-1.5)
A 		15.3
(3)
A 		10.2
(0.5)
A 		3.2
(-3)
A 		12
B 14.4
(-1.7)
A 		44.2
(3)
A 		6.2
(-3)
A 		6.6
(-2.9)
A 		10.2
(-2.4)
A 		8.1
(-2.7)
A 		38
C 8.7
(-2.3)
A 		32.4
(3)
A 		17.7
(-0.3)
A 		12.8
(-1.4)
A 		5.4
(-3)
A 		6.4
(-2.8)
A 		27
avr 9.1
(-2.1) 		27.3
(3) 		10.1
(-1.8) 		11.6
(-1.4) 		8.6
(-2.2) 		5.9
(-3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180472_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13480
Sequence Type Exemplar sequence
Representative Public ID ZK1037.7 NCBI
Target Description ZK1037.7 /REP_DB=WormBase Gene ID /WP=CE16759 /TR=O45989 /GB=CAB03506.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074399(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074399 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-70) (srw-70) mRNA, complete cds. 11/11 None
GENEFINDER00000019047 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15331242:15335558:1 11/11 None
ZK1037.7 ENSEMBL cdna:known chromosome:CEL140:V:15331282:15332650:1 gene:ZK1037.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019041 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15331281-15332650(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-70
Ensembl ZK1037.7
Entrez Gene 191501 Entrez gene
SwissProt O45989 EMBL-EBI
WormBase CE16759 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03506 Hypothetical protein ZK1037.7 [Caenorhabditis elegans] ref|NP_506800.1| Serpentine Receptor, class W family member (srw-70) [Caenorhabditis elegans] 0.0
blast CAB03507 Hypothetical protein ZK1037.8 [Caenorhabditis elegans] ref|NP_506801.1| Serpentine Receptor, class H family member (srh-295) [Caenorhabditis elegans] 1.0E-141
blast CAB03506 Hypothetical protein ZK1037.7 [Caenorhabditis elegans] ref|NP_506800.1| Serpentine Receptor, class W family member (srw-70) [Caenorhabditis elegans] 1.0E-137
blast CAB07280 Hypothetical protein T03E6.6 [Caenorhabditis elegans] ref|NP_507197.1| Serpentine Receptor, class W family member (srw-73) [Caenorhabditis elegans] 8.0E-83
blast AAK72055 Serpentine receptor, class h protein 297 [Caenorhabditis elegans] ref|NP_494484.3| Serpentine Receptor, class H family member (srh-297) [Caenorhabditis elegans] 3.0E-76
blast CAE71070 Hypothetical protein CBG17914 [Caenorhabditis briggsae] 5.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 7.8E-101
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506800.1 8 13-35,40-62,83-100,105-127,134-156,208-230,251-273,293-312
ZK1037.7 8 13-35,40-62,83-100,105-127,134-156,208-230,251-273,293-312
GENEFINDER00000019047 12 86-103,108-130,137-159,211-233,254-276,296-315,328-350,365-387,399-421,461-483,507-529,544-562
Sequence
Target Sequence 
>C. ELEGANS:180472_AT
ggatggtattactccaggttcacattagtcaaaaatggcgtctggcttcctgaagagaaa
tgcgggattccgcccacttataaacccattcggtatttccgaactgtaggtcggaaaata
ctcatttctcaaatgttatctaaaaaaatatatgctctgatcgatggtgcttccaacatt
atccccgccataatgtatccagtggtcactgtgattttagtgattcggatatgcaaaatt
cgaaaaaacaggtcacacttgaagagtcgacgggataattcagaaagagatcacacgtca
accctagtcgtgctaatgtcgatttcattctcaatttctcaaattccatttggaatatct
gtatggatagacgcgatgtttcaatttaacgccgtactagacagtttcatatacaatagc
aaatcgatcacatcaatcctttttactataaattccactttgcactgtatcatttttgcc
gctttgagctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATGGTATTACTCCAGGTTCACAT 422 515 463 Antisense
CAAAAATGGCGTCTGGCTTCCTGAA 252 189 492 Antisense
GAAATGCGGGATTCCGCCCACTTAT 640 361 519 Antisense
TCCGCCCACTTATAAACCCATTCGG 655 593 531 Antisense
ATATGCTCTGATCGATGGTGCTTCC 229 21 612 Antisense
CGATGGTGCTTCCAACATTATCCCC 25 251 624 Antisense
ATCCCCGCCATAATGTATCCAGTGG 57 39 643 Antisense
ATCACACGTCAACCCTAGTCGTGCT 521 25 752 Antisense
GTCGATTTCATTCTCAATTTCTCAA 614 473 780 Antisense
AAATTCCACTTTGCACTGTATCATT 610 115 912 Antisense
GTATCATTTTTGCCGCTTTGAGCTC 619 453 929 Antisense
Sequence Source Affymetrix Proprietary Database