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[180470_at]

Description F22F7.1 /REP_DB=WormBase Gene ID /WP=CE17691 /TR=Q9GZE9 /GB=AAF99915.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 41      4grp_highest_8_8 > 09      4grp_high_8_8 > 61      6grp_highest_nonorm > 26      6grp_total > 31      4grp_total > 58      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4544
1 2 3 4 range
A 2905.3
(-0.5)
P 		5079.4
(3)
P 		4919.9
(2.7)
P 		1373.4
(-3)
P 		3706
B 3214
(-0.7)
P 		4865.2
(1.6)
P 		5917.3
(3)
P 		1549.1
(-3)
P 		4368
C 3119.8
(-0.1)
P 		4438.4
(2.4)
P 		4786.9
(3)
P 		1532.1
(-3)
P 		3255
avr 3079.7
(-0.4) 		4794.3
(2.3) 		5208
(3) 		1484.9
(-3) 		3723

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6857
1 2 3 4 5 6 range
A 5256.5
(-0.6)
P 		7621.9
(2.3)
P 		8174.4
(3)
P 		5157.9
(-0.7)
P 		4252.6
(-1.8)
P 		3243
(-3)
P 		4931
B 4569
(-1.1)
P 		7101.1
(1.2)
P 		9196.4
(3)
P 		5671.5
(-0.1)
P 		3840.9
(-1.7)
P 		2379.4
(-3)
P 		6817
C 4939.9
(-1)
P 		6370.3
(0.3)
P 		9236.3
(3)
P 		4656.6
(-1.3)
P 		4519.3
(-1.4)
P 		2825
(-3)
P 		6411
avr 4921.8
(-0.9) 		7031.1
(1.2) 		8869
(3) 		5162
(-0.7) 		4204.3
(-1.6) 		2815.8
(-3) 		6053
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1467
1 2 3 4 range
A 1057.8
(1.7)
P 		1102.6
(2)
P 		1286.2
(3)
P 		201
(-3)
P 		1085
B 1024.9
(1)
P 		1201.6
(2)
P 		1371.2
(3)
P 		330.1
(-3)
P 		1041
C 1032.7
(0.3)
P 		1276.1
(1.3)
P 		1668.4
(3)
P 		258.3
(-3)
P 		1410
avr 1038.5
(0.9) 		1193.4
(1.7) 		1441.9
(3) 		263.1
(-3) 		1179

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1921
1 2 3 4 5 6 range
A 969
(-2.4)
P 		2710.7
(3)
P 		1780.2
(0.1)
P 		1308.2
(-1.4)
P 		1283.2
(-1.5)
P 		789.6
(-3)
P 		1921
B 1589.8
(-0.1)
P 		2363.7
(3)
P 		2233.2
(2.5)
P 		1502.2
(-0.5)
P 		1560.5
(-0.3)
P 		887.3
(-3)
P 		1476
C 1831
(0.8)
P 		1943.8
(1.3)
P 		2350.8
(3)
P 		936.4
(-3)
P 		1462.4
(-0.8)
P 		945.7
(-3)
P 		1414
avr 1463.3
(-0.6) 		2339.4
(3) 		2121.4
(2.1) 		1248.9
(-1.5) 		1435.4
(-0.7) 		874.2
(-3) 		1465
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180470_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15286
Sequence Type Exemplar sequence
Representative Public ID F22F7.1 NCBI
Target Description F22F7.1 /REP_DB=WormBase Gene ID /WP=CE17691 /TR=Q9GZE9 /GB=AAF99915.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071176(11), NM_182394(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071176 NCBI Caenorhabditis elegans F22F7.1a (F22F7.1) mRNA, complete cds. 11/11 None
NM_182394 NCBI Caenorhabditis elegans F22F7.1b (F22F7.1) mRNA, complete cds. 11/11 None
SNAP00000032283 ENSEMBL cdna:SNAP chromosome:CEL140:V:2127364:2129694:1 11/11 None
GENEFINDER00000032289 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2127364:2129694:1 11/11 None
F22F7.1a.3 ENSEMBL cdna:known chromosome:CEL140:V:2127361:2129824:1 gene:F22F7.1 11/11 None
F22F7.1a.2 ENSEMBL cdna:known chromosome:CEL140:V:2127361:2129824:1 gene:F22F7.1 11/11 None
F22F7.1a.1 ENSEMBL cdna:known chromosome:CEL140:V:2127363:2129824:1 gene:F22F7.1 11/11 None
F22F7.1b ENSEMBL cdna:known chromosome:CEL140:V:2127364:2129796:1 gene:F22F7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2127363-2129694(+) 100.0 100.0
Public Domain and Genome References
Ensembl F22F7.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99915 Hypothetical protein F22F7.1a [Caenorhabditis elegans] ref|NP_503577.1| F22F7.1a [Caenorhabditis elegans] 0.0
blast CAE71032 Hypothetical protein CBG17873 [Caenorhabditis briggsae] 0.0
blast AAN84819 Hypothetical protein F22F7.1b [Caenorhabditis elegans] ref|NP_872194.1| F22F7.1b [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503577.1 1 277-294
NP_872194.1 1 277-294
F22F7.1a.3 1 277-294
F22F7.1a.2 1 277-294
F22F7.1a.1 1 277-294
F22F7.1b 1 277-294
SNAP00000032283 1 277-294
GENEFINDER00000032289 1 277-294
Sequence
Target Sequence 
>C. ELEGANS:180470_AT
aaaggagctcaacggtgtcgctgttccattcccaggagccgacaaatccatcatcaaccg
ctcacaatactacgacgcaacatcccgccaagtccgtccaatccacatggaaacctacat
ccgcctctcatcccaattctacggatatctcatcggactctggatcatgttcctctcgat
cttcgtcaaatacccgttcacccgccgaatcctccaacaataccctgatcaatgcagttt
ctacatgttcaagaattcgggaccaagtgcccggcaaatggccgaagcttcgttcgtcta
ctggttcttcggatatggatacaaggaaacacttccactggatcagcaacacgagggaaa
aatcaatagaaaagtgttggctacttgcaagggaccagatgctggatatattgccactag
tggttgtgttctttccgccgcattaaccctgatcagagataaggacaacttgccaaagga
tggaggcgtctacaccacagctgctgctttcggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGGAGCTCAACGGTGTCGCTGTT 632 121 708 Antisense
TTCCATTCCCAGGAGCCGACAAATC 659 697 731 Antisense
TCAACCGCTCACAATACTACGACGC 321 631 761 Antisense
TCCACATGGAAACCTACATCCGCCT 674 587 809 Antisense
ATCGGACTCTGGATCATGTTCCTCT 290 35 859 Antisense
CGATCTTCGTCAAATACCCGTTCAC 170 249 884 Antisense
ATCCTCCAACAATACCCTGATCAAT 508 39 916 Antisense
GGGACCAAGTGCCCGGCAAATGGCC 271 401 966 Antisense
AAATGGCCGAAGCTTCGTTCGTCTA 371 115 983 Antisense
TTCGTCTACTGGTTCTTCGGATATG 291 693 1000 Antisense
TACACCACAGCTGCTGCTTTCGGAA 394 643 1198 Antisense
Sequence Source Affymetrix Proprietary Database