[Home] | [Total List]

[180467_at]

Description Y53F4B.1 /REP_DB=WormBase Gene ID /WP=CE22386 /TR=Q9NAC7 /GB=CAB61068.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 163
1 2 3 4 range
A 85.4
(-2.3)
A 		67.7
(-3)
A 		105.4
(-1.5)
A 		222
(3)
P 		154
B 91.6
(-2.1)
A 		87.8
(-2.5)
A 		83.6
(-3)
A 		135.4
(3)
A 		52
C 72.8
(-2.6)
A 		105.4
(-1.4)
A 		61.3
(-3)
A 		224
(3)
P 		163
avr 83.3
(-3) 		87
(-2.8) 		83.4
(-3) 		193.8
(3) 		111

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 280
1 2 3 4 5 6 range
A 42.7
(-3)
A 		104.2
(-1.7)
A 		76.6
(-2.3)
A 		67.6
(-2.5)
A 		127.7
(-1.2)
M 		322.9
(3)
P 		280
B 70.2
(-2.5)
A 		52.2
(-2.9)
A 		59
(-2.7)
A 		47.5
(-3)
A 		104.2
(-1.7)
P 		308.5
(3)
P 		261
C 64.5
(-2.7)
A 		62.8
(-2.7)
A 		81.5
(-2.3)
A 		50.9
(-3)
A 		103.7
(-1.8)
P 		312
(3)
P 		261
avr 59.1
(-2.9) 		73.1
(-2.6) 		72.4
(-2.6) 		55.3
(-3) 		111.9
(-1.7) 		314.5
(3) 		259
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 31.1
(2.5)
A 		14.7
(-3)
A 		27.5
(1.3)
A 		32.5
(3)
P 		18
B 29.2
(3)
A 		21.7
(-1.6)
A 		19.4
(-3)
A 		28.8
(2.8)
A 		10
C 24.1
(-2)
A 		30.3
(0.3)
A 		21.4
(-3)
A 		37.8
(3)
P 		16
avr 28.1
(0.3) 		22.2
(-3) 		22.8
(-2.7) 		33
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 7.9
(-3)
A 		37.1
(-0.5)
A 		16.7
(-2.3)
A 		17.1
(-2.2)
A 		38.5
(-0.4)
M 		78.6
(3)
P 		71
B 24.4
(-2.3)
A 		17.4
(-2.7)
A 		14.3
(-2.9)
A 		12.6
(-3)
A 		42.3
(-1.3)
P 		115
(3)
P 		102
C 23.9
(-2.1)
A 		19.2
(-2.4)
A 		20.7
(-2.3)
A 		10.2
(-3)
A 		33.6
(-1.5)
P 		104.4
(3)
P 		94
avr 18.7
(-2.6) 		24.6
(-2.2) 		17.2
(-2.7) 		13.3
(-3) 		38.1
(-1.3) 		99.3
(3) 		86
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180467_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2641
Sequence Type Exemplar sequence
Representative Public ID Y53F4B.1 NCBI
Target Description Y53F4B.1 /REP_DB=WormBase Gene ID /WP=CE22386 /TR=Q9NAC7 /GB=CAB61068.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064684(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064684 NCBI Caenorhabditis elegans Y53F4B.1 (Y53F4B.1) mRNA, complete cds. 11/11 None
SNAP00000043033 ENSEMBL cdna:SNAP chromosome:CEL140:II:14954247:14958079:-1 11/11 None
GENEFINDER00000043143 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14954168:14958079:-1 11/11 None
Y53F4B.1 ENSEMBL cdna:known chromosome:CEL140:II:14954168:14958079:-1 gene:Y53F4B.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14954164-14958076(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y53F4B.1
Entrez Gene 190206 Entrez gene
SwissProt Q9NAC7 EMBL-EBI
WormBase CE35672 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB61068 Hypothetical protein Y53F4B.1 [Caenorhabditis elegans] ref|NP_497085.2| Y53F4B.1 [Caenorhabditis elegans] 0.0
blast CAE73446 Hypothetical protein CBG20895 [Caenorhabditis briggsae] 1.0E-151
blast CAE73446 Hypothetical protein CBG20895 [Caenorhabditis briggsae] 1.0E-146
blast CAE73446 Hypothetical protein CBG20895 [Caenorhabditis briggsae] 1.0E-128
blast CAE64061 Hypothetical protein CBG08663 [Caenorhabditis briggsae] 2.0E-16
blast CAE64061 Hypothetical protein CBG08663 [Caenorhabditis briggsae] 3.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 4.4E-13
Pfam IPR000719 EMBL-EBI Protein kinase 5.8E-19
Pfam IPR000719 EMBL-EBI Protein kinase 1.2E-22
Sequence
Target Sequence 
>C. ELEGANS:180467_AT
gagagccgacctacttttaagcagcttctatcaaaattgaatagtcgccatactcattac
ttaagtctacgtggcacggatacacgccgattagaagcgaataatgagcgcgaagagttt
ttggatcattacaggattccgagaaaaatatcagtacaccgacgcacaacgaccacgtcg
acttgcatctccctatcagaaacttcgggctccaatcaggatatcagtgtgacgtcagca
gcctatttgggcggaccaattgtgaatcaaatgtttatagccgacacaccacttgcgtcc
ccttccgcatcccgtaaatttcgaaacgacggattcgaaaaaacaaactacgtggaaaat
cagctgtacacaggagatgagtgggtgcctaggaaaaaaacacgtaaaccattcttaacc
ggaggtatttcccatcctggctacagtgtgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAGCCGACCTACTTTTAAGCAGC 159 393 916 Antisense
GAATAGTCGCCATACTCATTACTTA 212 327 954 Antisense
GTGGCACGGATACACGCCGATTAGA 432 491 986 Antisense
AAATATCAGTACACCGACGCACAAC 389 113 1061 Antisense
ACAACGACCACGTCGACTTGCATCT 636 111 1081 Antisense
TTGCATCTCCCTATCAGAAACTTCG 530 701 1098 Antisense
AGAAACTTCGGGCTCCAATCAGGAT 312 71 1113 Antisense
GTCAGCAGCCTATTTGGGCGGACCA 440 465 1149 Antisense
AATGTTTATAGCCGACACACCACTT 128 163 1185 Antisense
TTAACCGGAGGTATTTCCCATCCTG 406 1 1330 Antisense
TTTCCCATCCTGGCTACAGTGTGAT 290 671 1343 Antisense
Sequence Source Affymetrix Proprietary Database