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[180466_s_at]

Description C05C8.1 /REP_DB=WormBase Gene ID /WP=CE07919 /TR=O16314 /GB=AAB65368.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 85      4grp_highest_8_8 > 45      4grp_high_8_8 > 01      6grp_highest_nonorm > 83      6grp_total > 65      4grp_total > 15      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 250.5
(1)
P 		215.7
(-3)
P 		220.7
(-2.4)
P 		267.3
(3)
P 		52
B 315.5
(3)
P 		198.8
(-3)
P 		214.2
(-2.2)
P 		310
(2.7)
P 		117
C 284.3
(3)
P 		239.9
(-3)
P 		250.6
(-1.6)
P 		261.9
(-0)
P 		44
avr 283.4
(3) 		218.1
(-3) 		228.5
(-2) 		279.7
(2.7) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 628
1 2 3 4 5 6 range
A 192.3
(-3)
P 		360.2
(-0.8)
P 		641.3
(3)
P 		508
(1.2)
P 		375.3
(-0.6)
P 		595.6
(2.4)
P 		449
B 224.4
(-3)
P 		392.5
(-1)
P 		661.2
(2.2)
P 		373.2
(-1.2)
P 		505.5
(0.3)
P 		728.6
(3)
P 		504
C 266.2
(-3)
P 		325
(-2.4)
P 		558.4
(0.2)
P 		506.8
(-0.4)
P 		472.6
(-0.8)
P 		820.1
(3)
P 		554
avr 227.6
(-3) 		359.2
(-1.4) 		620.3
(1.8) 		462.7
(-0.1) 		451.1
(-0.2) 		714.8
(3) 		487
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 91.2
(3)
P 		46.8
(-2.1)
P 		57.7
(-0.9)
P 		39.1
(-3)
P 		52
B 100.6
(3)
P 		49.1
(-3)
P 		49.6
(-2.9)
P 		66.1
(-1)
P 		52
C 94.1
(3)
P 		69
(-0)
P 		87.3
(2.2)
P 		44.2
(-3)
P 		50
avr 95.3
(3) 		55
(-2.3) 		64.9
(-1) 		49.8
(-3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 239
1 2 3 4 5 6 range
A 35.4
(-3)
P 		128.1
(2.1)
P 		139.7
(2.7)
P 		128.8
(2.1)
P 		113.3
(1.3)
P 		145
(3)
P 		110
B 78.1
(-3)
P 		130.7
(-1.4)
P 		160.6
(-0.4)
P 		98.8
(-2.4)
P 		205.4
(0.9)
P 		271.7
(3)
P 		194
C 98.7
(-3)
P 		99.2
(-3)
P 		142.1
(-1.5)
P 		101.9
(-2.9)
P 		152.9
(-1.2)
P 		274.5
(3)
P 		176
avr 70.7
(-3) 		119.3
(-1.2) 		147.5
(-0.1) 		109.8
(-1.5) 		157.2
(0.2) 		230.4
(3) 		160
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180466_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11787
Sequence Type Exemplar sequence
Representative Public ID C05C8.1 NCBI
Target Description C05C8.1 /REP_DB=WormBase Gene ID /WP=CE07919 /TR=O16314 /GB=AAB65368.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072441(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072441 NCBI Caenorhabditis elegans C05C8.1 (C05C8.1) mRNA, complete cds. 11/11 A 
SNAP00000024627 ENSEMBL cdna:SNAP chromosome:CEL140:V:7242364:7243889:1 11/11 None
GENEFINDER00000024634 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7242364:7243889:1 11/11 None
C05C8.1 ENSEMBL cdna:known chromosome:CEL140:V:7242364:7243889:1 gene:C05C8.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7240151-7245544(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C05C8.1
Entrez Gene 179119 Entrez gene
SwissProt O16314 EMBL-EBI
WormBase CE29480 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK95868 Hypothetical protein C05C8.1 [Caenorhabditis elegans] ref|NP_504842.1| C05C8.1 [Caenorhabditis elegans] 1.0E-113
blast AAK95868 Hypothetical protein C05C8.1 [Caenorhabditis elegans] ref|NP_504842.1| C05C8.1 [Caenorhabditis elegans] 1.0E-110
blast AAK95868 Hypothetical protein C05C8.1 [Caenorhabditis elegans] ref|NP_504842.1| C05C8.1 [Caenorhabditis elegans] 1.0E-107
blast T31746 hypothetical protein C05C8.1 - Caenorhabditis elegans 2.0E-95
blast T31746 hypothetical protein C05C8.1 - Caenorhabditis elegans 1.0E-92
blast T31746 hypothetical protein C05C8.1 - Caenorhabditis elegans 4.0E-89
blast XP_798324 PREDICTED: similar to ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s [Strongylocentrotus purpuratus] 3.0E-18
Sequence
Target Sequence 
>C. ELEGANS:180466_S_AT
gtcgtcattttgaaggcttgacaggaatcaaaagtgtctacttcatcaaatgtaagaatc
ttcatgattttggtcttgaatacatgggaaatcatgtaggaggtcacctgaaaactcttc
acattgaagaatgccgtcgtatcaccgaattcggattggagcatctaaccaaattctcgg
ctcttgataagctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGTCATTTTGAAGGCTTGACAGG 261 473 1043 Antisense
GGAATCAAAAGTGTCTACTTCATCA 293 531 1066 Antisense
GTGTCTACTTCATCAAATGTAAGAA 275 487 1076 Antisense
AAGAATCTTCATGATTTTGGTCTTG 28 153 1096 Antisense
GATTTTGGTCTTGAATACATGGGAA 514 429 1108 Antisense
TGGGAAATCATGTAGGAGGTCACCT 463 553 1127 Antisense
TTGAAGAATGCCGTCGTATCACCGA 513 699 1166 Antisense
TGCCGTCGTATCACCGAATTCGGAT 317 577 1174 Antisense
CGAATTCGGATTGGAGCATCTAACC 219 253 1188 Antisense
GCATCTAACCAAATTCTCGGCTCTT 374 307 1203 Antisense
CAAATTCTCGGCTCTTGATAAGCTT 119 193 1212 Antisense
Sequence Source Affymetrix Proprietary Database