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[180465_at]

Description C05C8.1 /REP_DB=WormBase Gene ID /WP=CE07919 /TR=O16314 /GB=AAB65368.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 74      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 96      6grp_total > 74      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 189
1 2 3 4 range
A 397.3
(-3)
P 		425.7
(3)
P 		418.1
(1.4)
P 		407
(-1)
P 		28
B 437.3
(-3)
P 		482
(3)
P 		452.6
(-0.9)
P 		442.8
(-2.3)
P 		45
C 459
(-1.8)
P 		445.8
(-2.3)
P 		428.1
(-3)
P 		586.7
(3)
P 		159
avr 431.2
(-3) 		451.2
(-0.5) 		432.9
(-2.8) 		478.8
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 905
1 2 3 4 5 6 range
A 411.1
(-3)
P 		681.8
(-0.8)
P 		1084.4
(2.4)
P 		1067.5
(2.3)
P 		757.8
(-0.2)
P 		1160.4
(3)
P 		749
B 441.7
(-3)
P 		539.1
(-2.3)
P 		1259.3
(3)
P 		839.6
(-0.1)
P 		789.3
(-0.4)
P 		1116.3
(2)
P 		818
C 537.8
(-3)
P 		618.2
(-2.4)
P 		926.3
(-0)
P 		840.8
(-0.7)
P 		891.8
(-0.3)
P 		1315.8
(3)
P 		778
avr 463.5
(-3) 		613
(-1.8) 		1090
(2.1) 		916
(0.7) 		813
(-0.1) 		1197.5
(3) 		734
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 144.6
(3)
P 		92.4
(-0.7)
P 		109.3
(0.5)
P 		59.6
(-3)
P 		85
B 139.5
(3)
P 		119
(0.3)
P 		104.9
(-1.6)
P 		94.4
(-3)
P 		45
C 151.9
(3)
P 		128.2
(0.3)
P 		149.2
(2.7)
P 		98.9
(-3)
P 		53
avr 145.3
(3) 		113.2
(-0.2) 		121.1
(0.6) 		84.3
(-3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 365
1 2 3 4 5 6 range
A 75.8
(-3)
P 		242.5
(1.8)
P 		236.2
(1.7)
P 		270.7
(2.7)
P 		228.7
(1.4)
P 		282.5
(3)
P 		207
B 153.7
(-3)
P 		179.4
(-2.4)
P 		305.8
(0.5)
P 		222.4
(-1.4)
P 		320.7
(0.8)
P 		416.3
(3)
P 		263
C 199.3
(-2.3)
P 		188.6
(-2.6)
P 		235.8
(-1.5)
P 		169.1
(-3)
P 		288.6
(-0.4)
P 		440.5
(3)
P 		271
avr 142.9
(-3) 		203.5
(-1.5) 		259.3
(-0.1) 		220.7
(-1) 		279.3
(0.5) 		379.8
(3) 		237
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180465_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11787
Sequence Type Exemplar sequence
Representative Public ID C05C8.1 NCBI
Target Description C05C8.1 /REP_DB=WormBase Gene ID /WP=CE07919 /TR=O16314 /GB=AAB65368.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072441(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072441 NCBI Caenorhabditis elegans C05C8.1 (C05C8.1) mRNA, complete cds. 11/11 A 
SNAP00000024627 ENSEMBL cdna:SNAP chromosome:CEL140:V:7242364:7243889:1 11/11 None
GENEFINDER00000024634 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7242364:7243889:1 11/11 None
C05C8.1 ENSEMBL cdna:known chromosome:CEL140:V:7242364:7243889:1 gene:C05C8.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7240151-7245544(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C05C8.1
Entrez Gene 179119 Entrez gene
SwissProt O16314 EMBL-EBI
WormBase CE29480 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK95868 Hypothetical protein C05C8.1 [Caenorhabditis elegans] ref|NP_504842.1| C05C8.1 [Caenorhabditis elegans] 1.0E-113
blast AAK95868 Hypothetical protein C05C8.1 [Caenorhabditis elegans] ref|NP_504842.1| C05C8.1 [Caenorhabditis elegans] 1.0E-110
blast AAK95868 Hypothetical protein C05C8.1 [Caenorhabditis elegans] ref|NP_504842.1| C05C8.1 [Caenorhabditis elegans] 1.0E-107
blast T31746 hypothetical protein C05C8.1 - Caenorhabditis elegans 2.0E-95
blast T31746 hypothetical protein C05C8.1 - Caenorhabditis elegans 1.0E-92
blast T31746 hypothetical protein C05C8.1 - Caenorhabditis elegans 4.0E-89
blast XP_798324 PREDICTED: similar to ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s [Strongylocentrotus purpuratus] 3.0E-18
Sequence
Target Sequence 
>C. ELEGANS:180465_AT
tttacccaagccctgggacaacacaatattcccggactccgttgggttctggagggattc
aacaactatgatgttcaaagagtgaaggaggtgggtgcagatcgtgctgcagctgaatgg
attgtgagatgtggtggaagtatcaagttcaatcagatcgctgagacgtttgaggattat
aattgtttggtgaaaagaactgcacaattggatccgagactttcacaggataatgtcact
ctggaaacaatcagagctgtcaatgcaagtgttactggatttggttgtcgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTACCCAAGCCCTGGGACAACACA 352 671 757 Antisense
ACAACACAATATTCCCGGACTCCGT 233 111 774 Antisense
GGACTCCGTTGGGTTCTGGAGGGAT 488 507 790 Antisense
GAAGGAGGTGGGTGCAGATCGTGCT 93 335 840 Antisense
AGATCGTGCTGCAGCTGAATGGATT 339 67 855 Antisense
GTATCAAGTTCAATCAGATCGCTGA 544 453 896 Antisense
CAGATCGCTGAGACGTTTGAGGATT 254 207 910 Antisense
AGAACTGCACAATTGGATCCGAGAC 536 73 952 Antisense
GACTTTCACAGGATAATGTCACTCT 589 371 974 Antisense
GAGCTGTCAATGCAAGTGTTACTGG 528 387 1010 Antisense
GTGTTACTGGATTTGGTTGTCGTCA 495 485 1025 Antisense
Sequence Source Affymetrix Proprietary Database