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[180464_s_at]

Description C52E4.6B /REP_DB=WormBase Gene ID /WP=CE17598 /TR=Q18789 /GB=CAB01417.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 65      6grp_high1_10_10 > 56      4grp_highest_8_8 > 37      4grp_high_8_8 > 01      6grp_highest_nonorm > 82      6grp_total > 57      4grp_total > 15      6grp_cgc > 37      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 391
(3)
P 		197.8
(-3)
P 		230.5
(-2)
P 		349.8
(1.7)
P 		193
B 304
(3)
P 		250.9
(-0.9)
P 		221.4
(-3)
P 		277.5
(1.1)
P 		83
C 228.2
(-2)
P 		206.5
(-3)
P 		258.8
(-0.7)
P 		340.3
(3)
P 		134
avr 307.7
(2.1) 		218.4
(-3) 		236.9
(-1.9) 		322.5
(3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 252
1 2 3 4 5 6 range
A 340.1
(0.8)
P 		333.6
(0.6)
P 		243.4
(-2.7)
P 		370.9
(2)
P 		234.7
(-3)
P 		399.1
(3)
P 		164
B 330.2
(-0.5)
P 		418.8
(3)
P 		267.2
(-3)
P 		402.6
(2.4)
P 		281.1
(-2.4)
P 		399.5
(2.2)
P 		152
C 278.5
(-2.4)
P 		256.2
(-3)
P 		327.3
(-1.1)
P 		295.8
(-2)
P 		269.8
(-2.6)
P 		486.2
(3)
P 		230
avr 316.3
(-1) 		336.2
(-0.3) 		279.3
(-2.4) 		356.4
(0.4) 		261.9
(-3) 		428.3
(3) 		166
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 142.4
(3)
P 		42.9
(-3)
P 		60.3
(-2)
P 		51.2
(-2.5)
P 		100
B 96.9
(3)
P 		62
(-1.6)
P 		51.3
(-3)
P 		59.1
(-2)
P 		46
C 75.5
(0.3)
P 		59.4
(-2.6)
P 		90.2
(3)
P 		57.4
(-3)
P 		33
avr 104.9
(3) 		54.8
(-3) 		67.3
(-1.5) 		55.9
(-2.9) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 62.7
(-2.1)
P 		118.7
(3)
P 		53
(-3)
P 		94.1
(0.8)
P 		70.8
(-1.4)
P 		97.2
(1)
P 		66
B 114.9
(0.6)
P 		139.4
(2.3)
P 		64.9
(-3)
P 		106.6
(-0)
P 		114.2
(0.5)
P 		149
(3)
P 		84
C 103.2
(-0.5)
P 		78.2
(-1.9)
P 		83.3
(-1.6)
P 		59.5
(-3)
P 		87.3
(-1.4)
P 		162.8
(3)
P 		103
avr 93.6
(-0.7) 		112.1
(0.9) 		67.1
(-3) 		86.7
(-1.3) 		90.8
(-0.9) 		136.3
(3) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180464_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13634
Sequence Type Exemplar sequence
Representative Public ID C52E4.6B NCBI
Target Description C52E4.6B /REP_DB=WormBase Gene ID /WP=CE17598 /TR=Q18789 /GB=CAB01417.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NR_001507(11), NM_073606(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NR_001507 NCBI Caenorhabditis elegans cyl-1, miscRNA. 11/11 None
NM_073606 NCBI Caenorhabditis elegans CYclin L family member (cyl-1) (cyl-1) mRNA, complete cds. 11/11 A 
SNAP00000019788 ENSEMBL cdna:SNAP chromosome:CEL140:V:11993752:11996283:-1 11/11 None
GENEFINDER00000019797 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11993752:11996283:-1 11/11 None
C52E4.6a ENSEMBL cdna:known chromosome:CEL140:V:11993603:11996312:-1 gene:C52E4.6 11/11 A 
C52E4.6b.1 ENSEMBL cdna:known chromosome:CEL140:V:11995198:11996311:-1 gene:C52E4.6 11/11 None
C52E4.6b.3 ENSEMBL cdna:known chromosome:CEL140:V:11995198:11996316:-1 gene:C52E4.6 11/11 None
C52E4.6b.2 ENSEMBL cdna:known chromosome:CEL140:V:11995198:11996355:-1 gene:C52E4.6 11/11 None
C52E4.6b.4 ENSEMBL cdna:known chromosome:CEL140:V:11995198:11996531:-1 gene:C52E4.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11995197-11996283(-) 100.0 100.0
Public Domain and Genome References
Ensembl C52E4.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAS64750 cyclin L; C52E4.6a [Caenorhabditis elegans] emb|CAB01416.1| Hypothetical protein C52E4.6a [Caenorhabditis elegans] ref|NP_506007.1| CYclin L family member (cyl-1) [Caenorhabditis elegans] 0.0
blast AAS64750 cyclin L; C52E4.6a [Caenorhabditis elegans] emb|CAB01416.1| Hypothetical protein C52E4.6a [Caenorhabditis elegans] ref|NP_506007.1| CYclin L family member (cyl-1) [Caenorhabditis elegans] 1.0E-123
blast AAS64750 cyclin L; C52E4.6a [Caenorhabditis elegans] emb|CAB01416.1| Hypothetical protein C52E4.6a [Caenorhabditis elegans] ref|NP_506007.1| CYclin L family member (cyl-1) [Caenorhabditis elegans] 1.0E-108
blast CAE75364 Hypothetical protein CBG23348 [Caenorhabditis briggsae] 1.0E-100
Sequence
Target Sequence 
>C. ELEGANS:180464_S_AT
tacgcaaattactcctagttcttttggtaaaaggcctctttattcgaaagtagatatcaa
ttgtgataagtggttgatgacgctagatgaagaatcacgtttgaaaatcgataatccccc
ctcgctagttgatggtctctccaaggaaacagaatcggagcttcgatatcttggctgtga
acttatacaacaaggagcaatccttttaaaacttccacaaacagctgctgctactggtca
aattttgttccaacgatattattatcagaaaagctttgttaggtatcactttgagcacgc
agttcaagcttgtctacttcttgcatccaaaatcgaagaagaacctcgtaggcctcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACGCAAATTACTCCTAGTTCTTTT 556 591 165 Antisense
TTTGAAAATCGATAATCCCCCCTCG 329 553 264 Antisense
CTCGCTAGTTGATGGTCTCTCCAAG 595 227 285 Antisense
AGCTTCGATATCTTGGCTGTGAACT 170 79 323 Antisense
GAGCAATCCTTTTAAAACTTCCACA 107 391 359 Antisense
AAAACTTCCACAAACAGCTGCTGCT 215 131 372 Antisense
AGCTGCTGCTACTGGTCAAATTTTG 186 81 387 Antisense
GGTATCACTTTGAGCACGCAGTTCA 308 505 446 Antisense
ACGCAGTTCAAGCTTGTCTACTTCT 636 91 461 Antisense
GTCTACTTCTTGCATCCAAAATCGA 527 469 476 Antisense
CGAAGAAGAACCTCGTAGGCCTCGA 113 251 498 Antisense
Sequence Source Affymetrix Proprietary Database