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[180463_s_at]

Description T02C5.3 /REP_DB=WormBase Gene ID /WP=CE04850 /TR=Q22096 /GB=AAB36866.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 56      4grp_high_8_8 > 53      6grp_total > 57      4grp_total > 58      6grp_cgc > 27      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 320
1 2 3 4 range
A 318.2
(0.3)
P 		374.6
(2.1)
P 		405.2
(3)
A 		209.8
(-3)
M 		195
B 250.4
(-1.9)
P 		459.5
(3)
A 		440.5
(2.6)
P 		205.1
(-3)
P 		254
C 305.7
(-0.3)
M 		484.3
(3)
P 		368.1
(0.8)
P 		164.3
(-3)
A 		320
avr 291.4
(-0.6) 		439.5
(3) 		404.6
(2.2) 		193.1
(-3) 		246

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 418
1 2 3 4 5 6 range
A 294.7
(-1.9)
P 		417.1
(-0.1)
P 		223.1
(-3)
A 		351.8
(-1)
P 		227.3
(-2.9)
P 		618.2
(3)
P 		395
B 322.1
(1.5)
P 		263.5
(-0.7)
P 		268.7
(-0.5)
A 		363.7
(3)
P 		200.5
(-3)
P 		339.6
(2.1)
P 		163
C 453.1
(3)
P 		318.1
(-2.9)
P 		316.6
(-3)
P 		317.2
(-3)
P 		333.3
(-2.3)
P 		355.1
(-1.3)
P 		137
avr 356.6
(0.4) 		332.9
(-0.4) 		269.5
(-2.5) 		344.2
(-0) 		253.7
(-3) 		437.6
(3) 		184
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 115.9
(3)
P 		81.3
(0.6)
P 		105.9
(2.3)
A 		30.7
(-3)
M 		85
B 79.9
(0.1)
P 		113.5
(3)
A 		102.1
(2)
P 		43.7
(-3)
P 		70
C 101.2
(1)
M 		139.2
(3)
P 		128.3
(2.4)
P 		27.7
(-3)
A 		112
avr 99
(2) 		111.3
(2.9) 		112.1
(3) 		34
(-3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 54.3
(-2.7)
P 		148.3
(2.9)
P 		48.6
(-3)
A 		89.2
(-0.6)
P 		68.6
(-1.8)
P 		150.5
(3)
P 		102
B 112.1
(1.6)
P 		87.7
(-0.8)
P 		65.2
(-3)
A 		96.3
(0)
P 		81.5
(-1.4)
P 		126.7
(3)
P 		62
C 167.9
(3)
P 		97.1
(-1.1)
P 		80.6
(-2)
P 		63.8
(-3)
P 		107.8
(-0.5)
P 		118.9
(0.2)
P 		104
avr 111.4
(1.2) 		111
(1.1) 		64.8
(-3) 		83.1
(-1.4) 		86
(-1.1) 		132
(3) 		67
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180463_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18086
Sequence Type Exemplar sequence
Representative Public ID T02C5.3 NCBI
Target Description T02C5.3 /REP_DB=WormBase Gene ID /WP=CE04850 /TR=Q22096 /GB=AAB36866.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076078(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076078 NCBI Caenorhabditis elegans ImmunoGlobulin-like Cell adhesion Molecule family member (igcm-3) (igcm-3) mRNA, complete cds. 11/11 None
T02C5.3 ENSEMBL cdna:known chromosome:CEL140:X:2698251:2705860:-1 gene:T02C5.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029791 4/11 Cross Hyb Matching Probes None
GENEFINDER00000029798 8/11 Cross Hyb Matching Probes None
SNAP00000029792 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2698591-2705850(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol igcm-3
Ensembl T02C5.3
Entrez Gene 180569 Entrez gene
SwissProt Q22096 EMBL-EBI
WormBase CE34589 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB36866 Hypothetical protein T02C5.3 [Caenorhabditis elegans] ref|NP_508479.2| ImmunoGlobulin-like Cell adhesion Molecule family member (igcm-3) [Caenorhabditis elegans] 0.0
blast CAE58842 Hypothetical protein CBG02061 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.024
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0020
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508479.2 1 507-529
T02C5.3 1 507-529
Sequence
Target Sequence 
>C. ELEGANS:180463_S_AT
cttccgttttgattcagctgtcaccaacaacacagttcccaactgttacattgctcggct
ctcaatttccccagttcgtgaagaagatcaatatcgtcggattgctctcaaactccagaa
ccaattcggatcgaaacaaatcccagtctccatggatgcgttacttggtggggatagtgc
gatggtgggtcgcatgccaactttctggatgtacattttgattggcgtcgctgctttgct
gtttgtcatctgtattattgcagtttgtgttagaagacgcgtgaaagatcacccagacta
caatgagccgaaaacaaaagcaaacttgaacattcaccaagaaaatgattatttcgagcc
accaccaaatgctccacgattgttcgcacaacacccacccgagaagaaacggacaacggt
cgctgcattccacgagggtgtgaactatgcagagctcgaactcaaaagaggcttcgcagc
acagccatcaagtaccgtatcaatcagctctgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCCGTTTTGATTCAGCTGTCACC 535 217 1329 Antisense
GTTCCCAACTGTTACATTGCTCGGC 475 441 1363 Antisense
ATATCGTCGGATTGCTCTCAAACTC 309 21 1419 Antisense
TCCCAGTCTCCATGGATGCGTTACT 276 599 1469 Antisense
GTCGCATGCCAACTTTCTGGATGTA 174 475 1517 Antisense
TTTTGATTGGCGTCGCTGCTTTGCT 192 679 1544 Antisense
CTGCTTTGCTGTTTGTCATCTGTAT 14 239 1559 Antisense
AAATGCTCCACGATTGTTCGCACAA 708 119 1695 Antisense
GAAACGGACAACGGTCGCTGCATTC 704 357 1734 Antisense
AAAGAGGCTTCGCAGCACAGCCATC 384 121 1793 Antisense
AAGTACCGTATCAATCAGCTCTGTT 468 157 1818 Antisense
Sequence Source Affymetrix Proprietary Database