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[180462_at]

Description C07E3.10 /REP_DB=WormBase Gene ID /WP=CE15607 /TR=O17579 /GB=CAA90101.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 81      6grp_highest_nonorm > 62      6grp_total > 81      4grp_total > 49      6grp_highest_sub > 04_05      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 843
1 2 3 4 range
A 41.1
(-3)
A 		653.8
(2.9)
P 		668.5
(3)
P 		86.8
(-2.6)
P 		627
B 56
(-3)
A 		640.2
(1.3)
P 		865.2
(3)
P 		56.7
(-3)
P 		809
C 22.3
(-3)
A 		623.9
(1.9)
P 		753
(3)
P 		76.6
(-2.6)
P 		731
avr 39.8
(-3) 		639.3
(2) 		762.2
(3) 		73.4
(-2.7) 		722

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 901
1 2 3 4 5 6 range
A 94.2
(-2.8)
P 		467.4
(0.3)
P 		483.3
(0.4)
P 		795.3
(3)
P 		675.3
(2)
P 		66.4
(-3)
P 		729
B 130.8
(-2.9)
P 		494.3
(0.4)
P 		512.3
(0.6)
P 		778.9
(3)
P 		720.1
(2.5)
P 		124.2
(-3)
P 		655
C 70.7
(-3)
P 		485
(-0.2)
P 		354.4
(-1.1)
P 		967.6
(3)
P 		569.8
(0.3)
P 		118
(-2.7)
P 		897
avr 98.6
(-3) 		482.2
(0.1) 		450
(-0.2) 		847.3
(3) 		655.1
(1.5) 		102.9
(-3) 		749
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 255
1 2 3 4 range
A 15
(-2.9)
A 		141.9
(1.8)
P 		174.7
(3)
P 		12.7
(-3)
P 		162
B 17.9
(-2.8)
A 		158.1
(1.6)
P 		200.5
(3)
P 		12.1
(-3)
P 		188
C 7.4
(-3)
A 		179.4
(1)
P 		262.5
(3)
P 		12.9
(-2.9)
P 		255
avr 13.4
(-3) 		159.8
(1.4) 		212.6
(3) 		12.6
(-3) 		200

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 276
1 2 3 4 5 6 range
A 17.4
(-3)
P 		166.2
(1.8)
P 		105.3
(-0.2)
P 		201.7
(2.9)
P 		203.8
(3)
P 		16.2
(-3)
P 		188
B 45.5
(-3)
P 		164.5
(-0.1)
P 		124.4
(-1.1)
P 		206.3
(0.9)
P 		292.6
(3)
P 		46.3
(-3)
P 		247
C 26.2
(-3)
P 		148
(1.3)
P 		90.2
(-0.7)
P 		194.6
(3)
P 		184.4
(2.6)
P 		39.5
(-2.5)
P 		168
avr 29.7
(-3) 		159.6
(1) 		106.6
(-0.7) 		200.9
(2.2) 		226.9
(3) 		34
(-2.9) 		197
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180462_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2839
Sequence Type Exemplar sequence
Representative Public ID C07E3.10 NCBI
Target Description C07E3.10 /REP_DB=WormBase Gene ID /WP=CE15607 /TR=O17579 /GB=CAA90101.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063824(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063824 NCBI Caenorhabditis elegans C07E3.10 (C07E3.10) mRNA, complete cds. 11/11 None
C07E3.10 ENSEMBL cdna:known chromosome:CEL140:II:10346307:10346918:1 gene:C07E3.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10346308-10346756(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C07E3.10
Entrez Gene 174599 Entrez gene
SwissProt O17579 EMBL-EBI
WormBase CE15607 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90101 Hypothetical protein C07E3.10 [Caenorhabditis elegans] ref|NP_496225.1| C07E3.10 [Caenorhabditis elegans] 1.0E-35
blast CAE59377 Hypothetical protein CBG02730 [Caenorhabditis briggsae] 3.0E-26
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496225.1 1 10-32
C07E3.10 1 10-32
Sequence
Target Sequence 
>C. ELEGANS:180462_AT
atgttcgtcacattatcctacacaacgcacacaattatctcaatatctctacatgttttc
ggagtagtggttggactattcgtatggtatttattcccgaaaaatccgacgcgctcaatt
gtccaactcccgtcagaaagagtagctgtctcgattgaaactccaataactacaagaagt
gaaaaactgaatgcctactccccgacaagttctaataataattttacgacgaatgacggc
gga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTTCGTCACATTATCCTACACAA 89 101 13 Antisense
TTATCCTACACAACGCACACAATTA 666 679 25 Antisense
CACAACGCACACAATTATCTCAATA 97 195 33 Antisense
ATCTCAATATCTCTACATGTTTTCG 232 31 49 Antisense
CATGTTTTCGGAGTAGTGGTTGGAC 428 207 64 Antisense
GTGGTTGGACTATTCGTATGGTATT 439 489 79 Antisense
AAAAATCCGACGCGCTCAATTGTCC 481 127 112 Antisense
ATTGTCCAACTCCCGTCAGAAAGAG 109 3 130 Antisense
GTAGCTGTCTCGATTGAAACTCCAA 157 457 154 Antisense
CTACTCCCCGACAAGTTCTAATAAT 172 227 207 Antisense
TAATTTTACGACGAATGACGGCGGA 262 627 231 Antisense
Sequence Source Affymetrix Proprietary Database