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[180461_at]

Description F20B4.6 /REP_DB=WormBase Gene ID /WP=CE07105 /TR=Q19624 /GB=AAC48147.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 58      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 46.2
(-1.7)
A 		98.4
(1.4)
A 		126.1
(3)
A 		24.6
(-3)
A 		102
B 60.3
(-3)
A 		66
(-2)
A 		94.4
(3)
A 		82.3
(0.9)
A 		34
C 101.1
(2.3)
A 		108.8
(3)
A 		71.6
(-0.5)
A 		45.2
(-3)
A 		64
avr 69.2
(-0.6) 		91.1
(2.2) 		97.4
(3) 		50.7
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 24.4
(-2.3)
A 		78.2
(3)
A 		17.7
(-3)
A 		57.7
(1)
A 		73
(2.5)
A 		67.3
(1.9)
A 		61
B 58.7
(-0.2)
A 		47.1
(-1.3)
A 		77.6
(1.7)
A 		90.3
(3)
A 		30.5
(-3)
A 		74
(1.4)
A 		60
C 70.2
(-0.8)
A 		90.3
(2.7)
A 		57.4
(-3)
A 		91.8
(3)
A 		72.2
(-0.4)
A 		80.3
(1)
A 		34
avr 51.1
(-3) 		71.9
(1.3) 		50.9
(-3) 		79.9
(3) 		58.6
(-1.4) 		73.9
(1.8) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 16.8
(-0.3)
A 		21.4
(0.6)
A 		33
(3)
A 		3.6
(-3)
A 		29
B 19.2
(0.1)
A 		16.3
(-3)
A 		21.9
(3)
A 		17.5
(-1.7)
A 		6
C 33.5
(3)
A 		31.3
(2.5)
A 		25
(1)
A 		7.6
(-3)
A 		26
avr 23.2
(1.8) 		23
(1.7) 		26.6
(3) 		9.6
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 4.5
(-2.8)
A 		27.8
(3)
A 		3.9
(-3)
A 		14.6
(-0.3)
A 		22
(1.5)
A 		16.4
(0.1)
A 		24
B 20.4
(0.2)
A 		15.7
(-1.7)
A 		18.8
(-0.5)
A 		23.9
(1.5)
A 		12.4
(-3)
A 		27.6
(3)
A 		15
C 26
(2.3)
A 		27.5
(3)
A 		14.6
(-3)
A 		18.5
(-1.2)
A 		23.4
(1.1)
A 		26.9
(2.7)
A 		13
avr 17
(-0.6) 		23.7
(3) 		12.4
(-3) 		19
(0.5) 		19.3
(0.7) 		23.6
(2.9) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180461_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17998
Sequence Type Exemplar sequence
Representative Public ID F20B4.6 NCBI
Target Description F20B4.6 /REP_DB=WormBase Gene ID /WP=CE07105 /TR=Q19624 /GB=AAC48147.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078456(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078456 NCBI Caenorhabditis elegans F20B4.6 (F20B4.6) mRNA, complete cds. 10/11 None
GENEFINDER00000007938 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17696384:17701333:1 10/11 None
SNAP00000007931 ENSEMBL cdna:SNAP chromosome:CEL140:X:17697464:17699743:1 10/11 None
F20B4.6 ENSEMBL cdna:known chromosome:CEL140:X:17695139:17701653:1 gene:F20B4.6 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17696382-17699742(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F20B4.6
Entrez Gene 181790 Entrez gene
SwissProt Q19624 EMBL-EBI
WormBase CE30960 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.5454.1.S1_AT UDP-glucose ceramide glucosyltransferase cfa
CHICKEN:GGA.17664.1.S1_AT UDP-glucose ceramide glucosyltransferase gga
HG-U95AV2:40215_AT UDP-glucose ceramide glucosyltransferase hs
HG-U133_PLUS_2:204881_S_AT UDP-glucose ceramide glucosyltransferase hs
HG-U133A_2:204881_S_AT UDP-glucose ceramide glucosyltransferase hs
HG-U133A:204881_S_AT UDP-glucose ceramide glucosyltransferase hs
HG-FOCUS:204881_S_AT UDP-glucose ceramide glucosyltransferase hs
HU35KSUBA:D50840_AT UDP-glucose ceramide glucosyltransferase hs
HUGENEFL:D50840_AT UDP-glucose ceramide glucosyltransferase hs
HU35KSUBA:AA505198_AT UDP-glucose ceramide glucosyltransferase hs
HU35KSUBA:RC_AA283066_AT UDP-glucose ceramide glucosyltransferase hs
U133_X3P:G4507810_3P_AT UDP-glucose ceramide glucosyltransferase hs
U133_X3P:HS.23703.0.A2_3P_AT UDP-glucose ceramide glucosyltransferase hs
U133_X3P:HS.23703.0.A1_3P_AT UDP-glucose ceramide glucosyltransferase hs
HG-U133A_2:221765_AT UDP-glucose ceramide glucosyltransferase hs
HG-U133_PLUS_2:221765_AT UDP-glucose ceramide glucosyltransferase hs
HG-U133A:221765_AT UDP-glucose ceramide glucosyltransferase hs
HG-U133_PLUS_2:224967_AT UDP-glucose ceramide glucosyltransferase hs
HG-U133B:224967_AT UDP-glucose ceramide glucosyltransferase hs
HG-U95B:45337_AT UDP-glucose ceramide glucosyltransferase hs
HG-U95C:51131_AT UDP-glucose ceramide glucosyltransferase hs
HG-U95C:61315_AT UDP-glucose ceramide glucosyltransferase hs
HG-U95AV2:40214_AT UDP-glucose ceramide glucosyltransferase hs
HG-U95D:88424_AT UDP-glucose ceramide glucosyltransferase hs
HU35KSUBB:RC_T68597_AT UDP-glucose ceramide glucosyltransferase hs
MG-U74AV2:94197_AT UDP-glucose ceramide glucosyltransferase mm
MOUSE430A_2:1421268_AT UDP-glucose ceramide glucosyltransferase mm
MOE430A:1421268_AT UDP-glucose ceramide glucosyltransferase mm
MOUSE430_2:1421268_AT UDP-glucose ceramide glucosyltransferase mm
MU11KSUBA:AA285635_S_AT UDP-glucose ceramide glucosyltransferase mm
MG-U74AV2:96623_AT UDP-glucose ceramide glucosyltransferase mm
MOE430A:1421269_AT UDP-glucose ceramide glucosyltransferase mm
MOUSE430A_2:1421269_AT UDP-glucose ceramide glucosyltransferase mm
MOUSE430_2:1421269_AT UDP-glucose ceramide glucosyltransferase mm
MOE430A:1435133_AT UDP-glucose ceramide glucosyltransferase mm
MOUSE430A_2:1435133_AT UDP-glucose ceramide glucosyltransferase mm
MOUSE430_2:1435133_AT UDP-glucose ceramide glucosyltransferase mm
MOE430B:1439863_AT UDP-glucose ceramide glucosyltransferase mm
MOUSE430_2:1439863_AT UDP-glucose ceramide glucosyltransferase mm
MU19KSUBB:TC34113_I_AT UDP-glucose ceramide glucosyltransferase (Ugcg), mRNA mm
RG-U34A:AF047707_AT UDP-glucose ceramide glucosyltransferase rn
RG-U34A:AJ224156_S_AT UDP-glucose ceramide glucosyltransferase rn
RG-U34A:AF047707_G_AT UDP-glucose ceramide glucosyltransferase rn
RG-U34C:RC_AI175580_AT UDP-glucose ceramide glucosyltransferase rn
RG-U34C:RC_AI138034_AT UDP-glucose ceramide glucosyltransferase rn
RAE230A:1387975_AT UDP-glucose ceramide glucosyltransferase rn
RAT230_2:1387975_AT UDP-glucose ceramide glucosyltransferase rn
RG-U34C:RC_AI231479_AT UDP-glucose ceramide glucosyltransferase rn
Protein Similarities
Method ID Description E-Value
blast AAC48147 Hypothetical protein F20B4.6 [Caenorhabditis elegans] ref|NP_510857.2| F20B4.6 [Caenorhabditis elegans] gb|AAK73018.1| ceramide glucosyltransferase [Caenorhabditis elegans] 0.0
blast AAC48147 Hypothetical protein F20B4.6 [Caenorhabditis elegans] ref|NP_510857.2| F20B4.6 [Caenorhabditis elegans] gb|AAK73018.1| ceramide glucosyltransferase [Caenorhabditis elegans] 1.0E-176
blast CAE59219 Hypothetical protein CBG02537 [Caenorhabditis briggsae] 1.0E-165
blast AAL32224 Hypothetical protein F59G1.1a [Caenorhabditis elegans] ref|NP_495182.2| F59G1.1a [Caenorhabditis elegans] 1.0E-165
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510857.2 2 57-79,354-376
F20B4.6 2 57-79,354-376
GENEFINDER00000007938 2 57-79,354-376
SNAP00000007931 1 292-314
Sequence
Target Sequence 
>C. ELEGANS:180461_AT
gtacttgcctgttttaatatcgccttgagtatttcagtatgggctacacttatatatttc
ggaacctctcatgccagaatttatctagccggaaactgcctccaattcaactgcccaacc
ggaatgtcatcgatgatgaaaaaggaagcattggatgaatgtggcggctttgctgcgttc
agtggatatcttgccgaggattacttcttcgggaagaaactggcgtctcgaggatacaaa
tcaggaatttctacacatccagcgctacaaaattctgctgcggtaaccatgacgtcattc
acggatagagtctgtcgatgggtgaagcttagaatggcaatgatgcctcaaattattttt
gtggagccgctgcaagattgcttcccttctgcactcataatttccttcagtctcaactac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACTTGCCTGTTTTAATATCGCCT 660 455 763 Antisense
ATATATTTCGGAACCTCTCATGCCA 73 19 814 Antisense
TTATCTAGCCGGAAACTGCCTCCAA 525 677 843 Antisense
TCAACTGCCCAACCGGAATGTCATC 266 629 869 Antisense
GGATGAATGTGGCGGCTTTGCTGCG 103 515 915 Antisense
GCTGCGTTCAGTGGATATCTTGCCG 363 297 934 Antisense
GAAACTGGCGTCTCGAGGATACAAA 2 359 978 Antisense
TTTCTACACATCCAGCGCTACAAAA 629 671 1010 Antisense
ATTCTGCTGCGGTAACCATGACGTC 216 9 1034 Antisense
GTGGAGCCGCTGCAAGATTGCTTCC 690 489 1123 Antisense
CATAATTTCCTTCAGTCTCAACTAC 218 213 1158 Antisense
Sequence Source Affymetrix Proprietary Database