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[180460_at] 7TM chemoreceptor, srw family

Description Y43F8A.4 /REP_DB=WormBase Gene ID /WP=CE21883 /TR=Q9XWL4 /GB=CAA21642.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 36      4grp_total > 39      6grp_cgc > 14      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 49.2
(3)
A 		14.8
(-3)
A 		29.9
(-0.4)
A 		32.4
(0.1)
A 		34
B 58.6
(3)
A 		10.2
(-3)
A 		13.8
(-2.6)
A 		31
(-0.4)
A 		48
C 11
(-1.9)
A 		28.9
(3)
A 		9.3
(-2.4)
A 		7.1
(-3)
A 		22
avr 39.6
(3) 		18
(-2.9) 		17.7
(-3) 		23.5
(-1.4) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 11.4
(-2.7)
A 		11.6
(-2.7)
A 		10.3
(-3)
A 		36.5
(3)
A 		10.8
(-2.9)
A 		12.3
(-2.5)
A 		26
B 56.4
(2.3)
A 		62.4
(3)
A 		11.3
(-3)
A 		12.3
(-2.9)
A 		20.1
(-2)
A 		40.3
(0.4)
A 		51
C 40.3
(0.1)
A 		69.4
(3)
A 		10.3
(-2.8)
A 		17.1
(-2.1)
A 		8.2
(-3)
A 		33
(-0.6)
A 		61
avr 36
(1.1) 		47.8
(3) 		10.6
(-3) 		22
(-1.2) 		13
(-2.6) 		28.5
(-0.1) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 17.9
(3)
A 		3.2
(-3)
A 		7.8
(-1.1)
A 		4.7
(-2.4)
A 		15
B 18.7
(3)
A 		2.5
(-3)
A 		3.2
(-2.7)
A 		6.6
(-1.5)
A 		16
C 3.6
(-1)
A 		8.3
(3)
A 		3.3
(-1.2)
A 		1.2
(-3)
A 		7
avr 13.4
(3) 		4.7
(-2.7) 		4.8
(-2.6) 		4.2
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 2.1
(-3)
A 		4.1
(-1.3)
A 		2.2
(-2.9)
A 		9.3
(3)
A 		3.3
(-2)
A 		3
(-2.3)
A 		7
B 19.6
(2.6)
A 		20.8
(3)
A 		2.7
(-3)
A 		3.2
(-2.8)
A 		8.2
(-1.2)
A 		15
(1.1)
A 		18
C 14.9
(1)
A 		21.2
(3)
A 		2.6
(-3)
A 		3.4
(-2.7)
A 		2.7
(-3)
A 		11
(-0.3)
A 		19
avr 12.2
(1.5) 		15.4
(3) 		2.5
(-3) 		5.3
(-1.7) 		4.7
(-2) 		9.7
(0.3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180460_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12942
Sequence Type Exemplar sequence
Representative Public ID Y43F8A.4 NCBI
Target Description Y43F8A.4 /REP_DB=WormBase Gene ID /WP=CE21883 /TR=Q9XWL4 /GB=CAA21642.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075371(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075371 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-84) (srw-84) mRNA, complete cds. 11/11 None
GENEFINDER00000034972 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19383841:19387333:1 11/11 None
Y43F8A.4 ENSEMBL cdna:known chromosome:CEL140:V:19383841:19387333:1 gene:Y43F8A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19383840-19387333(+) 97.93 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-84
Ensembl Y43F8A.4
Entrez Gene 189867 Entrez gene
SwissProt Q9XWL4 EMBL-EBI
WormBase CE21883 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21642 Hypothetical protein Y43F8A.4 [Caenorhabditis elegans] ref|NP_507772.1| Serpentine Receptor, class W family member (srw-84) [Caenorhabditis elegans] 0.0
blast CAE61688 Hypothetical protein CBG05634 [Caenorhabditis briggsae] 1.0E-116
blast CAB03920 Hypothetical protein C25F9.7 [Caenorhabditis elegans] ref|NP_507775.1| Serpentine Receptor, class W family member (srw-86) [Caenorhabditis elegans] 8.0E-47
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507772.1 7 38-57,64-83,121-140,161-183,227-249,278-300,315-337
Y43F8A.4 7 38-57,64-83,121-140,161-183,227-249,278-300,315-337
GENEFINDER00000034972 7 38-57,64-83,121-140,161-183,227-249,278-300,315-337
Sequence
Target Sequence 
>C. ELEGANS:180460_AT
gagatatccagactgggtgccgcctgagagctgcaaaatgtaccctccaaacaccacact
tccctggtttgagcaagttcaaaacccggatctcggcgattttcaacgacaaatttccac
taaatttctgtacattgacggagtttttaagataattcccccgattttatacccatttct
agcttttgggcttctttgggagctgaaaaaagctcgggacagccggaaaattttgatgag
aaagggggaagagcacgagatggtacacgtgacaaaattggtgatttttatgacaattgg
ctattttttggctgaaactcccgttggtatttcatatttttatttggcatacaatatggg
agaagattttgggattatatttctggccaacaacattacggtcatttttgtgacattttt
aattataaactcatcaattcactgcttcttttgctttttcttgtcttcacaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGATATCCAGACTGGGTGCCGCCT 203 397 561 Antisense
GTGCCGCCTGAGAGCTGCAAAATGT 372 477 577 Antisense
TGCAAAATGTACCCTCCAAACACCA 358 573 592 Antisense
GTTCAAAACCCGGATCTCGGCGATT 243 443 637 Antisense
GATTTTATACCCATTTCTAGCTTTT 673 427 723 Antisense
CTAGCTTTTGGGCTTCTTTGGGAGC 99 137 739 Antisense
TTGGCTGAAACTCCCGTTGGTATTT 441 709 868 Antisense
GGGATTATATTTCTGGCCAACAACA 350 495 931 Antisense
GGCCAACAACATTACGGTCATTTTT 545 539 945 Antisense
AAACTCATCAATTCACTGCTTCTTT 654 127 987 Antisense
TTTTGCTTTTTCTTGTCTTCACAAT 19 679 1009 Antisense
Sequence Source Affymetrix Proprietary Database