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[180459_s_at]

Description K10G6.4 /REP_DB=WormBase Gene ID /WP=CE12104 /TR=O16626 /GB=AAB66099.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 43      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 5.6
(-2)
A 		26.2
(3)
A 		1.3
(-3)
A 		3.8
(-2.4)
A 		25
B 1.6
(-3)
A 		6
(2.5)
A 		6.4
(3)
A 		3.9
(-0.1)
A 		5
C 5
(-1.9)
A 		21.9
(3)
A 		1.3
(-3)
A 		4
(-2.2)
A 		21
avr 4.1
(-2.6) 		18
(3) 		3
(-3) 		3.9
(-2.6) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 1.7
(-2.9)
A 		2.9
(-1.1)
A 		5.7
(3)
A 		4.1
(0.7)
A 		1.6
(-3)
A 		4
(0.5)
A 		4
B 1.9
(-2)
A 		3.9
(0.1)
A 		5.4
(1.7)
A 		6.7
(3)
A 		1.2
(-2.7)
A 		0.9
(-3)
A 		6
C 6.8
(-1.7)
A 		6.1
(-1.8)
A 		8
(-1.3)
A 		25.1
(3)
A 		1.5
(-3)
A 		2.6
(-2.7)
A 		24
avr 3.5
(-1.8) 		4.3
(-1.4) 		6.4
(-0.2) 		12
(3) 		1.4
(-3) 		2.5
(-2.4) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 2.1
(-1)
A 		5.7
(3)
A 		0.3
(-3)
A 		0.5
(-2.8)
A 		5
B 0.5
(-3)
A 		1.5
(3)
A 		1.5
(3)
A 		0.8
(-1.2)
A 		1
C 1.7
(-1.7)
A 		6.3
(3)
A 		0.4
(-3)
A 		0.7
(-2.7)
A 		6
avr 1.4
(-1.9) 		4.5
(3) 		0.7
(-3) 		0.7
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.3
(-3)
A 		1
(1.7)
A 		1.2
(3)
A 		1
(1.7)
A 		0.5
(-1.7)
A 		1
(1.7)
A 		1
B 0.7
(-1.4)
A 		1.3
(1)
A 		1.3
(1)
A 		1.8
(3)
A 		0.5
(-2.2)
A 		0.3
(-3)
A 		2
C 2.5
(-0.3)
A 		1.9
(-1.1)
A 		2
(-1)
A 		5
(3)
A 		0.5
(-3)
A 		0.9
(-2.5)
A 		5
avr 1.2
(-1) 		1.4
(-0.4) 		1.5
(-0.1) 		2.6
(3) 		0.5
(-3) 		0.7
(-2.4) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180459_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4659
Sequence Type Exemplar sequence
Representative Public ID K10G6.4 NCBI
Target Description K10G6.4 /REP_DB=WormBase Gene ID /WP=CE12104 /TR=O16626 /GB=AAB66099.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062301(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062301 NCBI Caenorhabditis elegans K10G6.4 (K10G6.4) mRNA, complete cds. 11/11 None
SNAP00000011081 ENSEMBL cdna:SNAP chromosome:CEL140:II:3972823:3974962:-1 10/11 None
GENEFINDER00000011088 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3972823:3974962:-1 11/11 None
K10G6.4 ENSEMBL cdna:known chromosome:CEL140:II:3972814:3974962:-1 gene:K10G6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3972821-3974592(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K10G6.4
Entrez Gene 173739 Entrez gene
SwissProt O16626 EMBL-EBI
WormBase CE28602 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494702 K10G6.4 [Caenorhabditis elegans] gb|AAB66099.2| Hypothetical protein K10G6.4 [Caenorhabditis elegans] 0.0
blast CAE71512 Hypothetical protein CBG18445 [Caenorhabditis briggsae] 1.0E-158
blast CAE71512 Hypothetical protein CBG18445 [Caenorhabditis briggsae] 1.0E-144
blast CAE71512 Hypothetical protein CBG18445 [Caenorhabditis briggsae] 1.0E-140
blast CAE71519 Hypothetical protein CBG18454 [Caenorhabditis briggsae] 1.0E-40
Sequence
Target Sequence 
>C. ELEGANS:180459_S_AT
tcaaaccgtggttgtcgaaacgttgagactgaaaaacgaagaacttttgaaagaaaattt
gaatttagagatgaagcaacggcaggagcaactagattttgcaaggcagctggcagattc
ggaagaaacattttcagttcgaatttcggagtttgagaagctctgcgagcaaaaggatct
gaaaattgaagacctacactcccaactggaaaagtgcgatcggcttcaagaatcgctgga
aaaagccgatagatctcgtcaaattgaagaagagcaccgagaacgtctagagttagaagt
gaagagtttgtatgaaaaactccaaaagtcggcagaagatcggcagaaagtcgagacaac
cttgaaattggatagggatcgattagaagtttcattggtaactatgaagaaaaaactcga
atcaactccagaagcaccggaaaatgttgagaaattgaggaaagaactgcgagattctga
aaaaagacgcctatcagaaaaggaaaagcatcaggcgatcacttccgagctgaaaagtgc
tctgaaacgacttgaacggagctacaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAACCGTGGTTGTCGAAACGTTG 663 577 534 Antisense
GAAGCAACGGCAGGAGCAACTAGAT 484 341 606 Antisense
GGCAGCTGGCAGATTCGGAAGAAAC 80 535 638 Antisense
AAATTGAAGACCTACACTCCCAACT 666 113 716 Antisense
GATCGGCTTCAAGAATCGCTGGAAA 404 417 751 Antisense
GAAGAGCACCGAGAACGTCTAGAGT 403 337 802 Antisense
GTCGGCAGAAGATCGGCAGAAAGTC 364 471 861 Antisense
ACTCGAATCAACTCCAGAAGCACCG 243 99 948 Antisense
GAAAAGCATCAGGCGATCACTTCCG 684 353 1036 Antisense
GGCGATCACTTCCGAGCTGAAAAGT 691 535 1047 Antisense
GAAACGACTTGAACGGAGCTACAGA 103 357 1077 Antisense
Sequence Source Affymetrix Proprietary Database