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[180458_at]

Description ZC196.4 /REP_DB=WormBase Gene ID /WP=CE15072 /TR=O01628 /GB=AAB52296.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 08      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 56.1
(-1.1)
A 		60.2
(-0.7)
A 		37.5
(-3)
A 		97.5
(3)
A 		60
B 47.6
(-3)
A 		52.2
(-2.4)
A 		90.7
(3)
A 		49.9
(-2.7)
A 		43
C 53.2
(-1.9)
A 		38
(-3)
A 		66.6
(-0.9)
A 		118.4
(3)
P 		80
avr 52.3
(-2.7) 		50.1
(-3) 		64.9
(-0.7) 		88.6
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 34.9
(-3)
A 		79.8
(0.9)
M 		85.2
(1.3)
A 		104.6
(3)
A 		94.3
(2.1)
A 		42.5
(-2.3)
A 		70
B 21.2
(-3)
A 		112.5
(3)
A 		57.8
(-0.6)
A 		99.2
(2.1)
A 		74.5
(0.5)
M 		50.9
(-1)
A 		91
C 11.6
(-3)
A 		86.2
(2.6)
P 		32.3
(-1.4)
A 		91.4
(3)
P 		84.5
(2.5)
A 		77.8
(2)
A 		80
avr 22.6
(-3) 		92.8
(2.6) 		58.4
(-0.2) 		98.4
(3) 		84.4
(1.9) 		57.1
(-0.3) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 20.4
(3)
A 		13.1
(-1.1)
A 		9.8
(-3)
A 		14.3
(-0.5)
A 		11
B 15.2
(-0.3)
A 		12.9
(-1.7)
A 		21
(3)
A 		10.6
(-3)
A 		10
C 17.6
(0.3)
A 		10.9
(-3)
A 		23.2
(3)
A 		20
(1.4)
P 		12
avr 17.7
(2.7) 		12.3
(-3) 		18
(3) 		15
(-0.2) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 6.4
(-3)
A 		28.4
(3)
M 		18.6
(0.3)
A 		26.5
(2.5)
A 		28.5
(3)
A 		10.4
(-1.9)
A 		22
B 7.4
(-3)
A 		37.4
(3)
A 		14
(-1.7)
A 		26.3
(0.8)
A 		30.3
(1.6)
M 		19
(-0.7)
A 		30
C 4.3
(-3)
A 		26.3
(2.7)
P 		8.2
(-2)
A 		18.4
(0.7)
P 		27.4
(3)
A 		26
(2.6)
A 		23
avr 6
(-3) 		30.7
(3) 		13.6
(-1.2) 		23.7
(1.3) 		28.7
(2.5) 		18.5
(0) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180458_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11762
Sequence Type Exemplar sequence
Representative Public ID ZC196.4 NCBI
Target Description ZC196.4 /REP_DB=WormBase Gene ID /WP=CE15072 /TR=O01628 /GB=AAB52296.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072848(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072848 NCBI Caenorhabditis elegans ZC196.4 (ZC196.4) mRNA, complete cds. 10/11 None
SNAP00000023102 ENSEMBL cdna:SNAP chromosome:CEL140:V:8736654:8738283:1 11/11 None
GENEFINDER00000023107 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8735810:8738283:1 11/11 None
ZC196.4 ENSEMBL cdna:known chromosome:CEL140:V:8735976:8738283:1 gene:ZC196.4 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8735976-8738284(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC196.4
Entrez Gene 191103 Entrez gene
SwissProt O01628 EMBL-EBI
WormBase CE36348 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52296 Hypothetical protein ZC196.4 [Caenorhabditis elegans] ref|NP_505249.2| ZC196.4 [Caenorhabditis elegans] 0.0
blast AAB52296 Hypothetical protein ZC196.4 [Caenorhabditis elegans] ref|NP_505249.2| ZC196.4 [Caenorhabditis elegans] 1.0E-171
blast CAE71571 Hypothetical protein CBG18522 [Caenorhabditis briggsae] 4.0E-33
blast AAB52292 Hypothetical protein ZC196.3 [Caenorhabditis elegans] ref|NP_505250.1| ZC196.3 [Caenorhabditis elegans] 3.0E-32
blast CAE71574 Hypothetical protein CBG18528 [Caenorhabditis briggsae] 1.0E-16
blast AAB52292 Hypothetical protein ZC196.3 [Caenorhabditis elegans] ref|NP_505250.1| ZC196.3 [Caenorhabditis elegans] 2.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR007883 EMBL-EBI Protein of unknown function DUF713 4.8E-80
Pfam IPR007883 EMBL-EBI Protein of unknown function DUF713 4.5E-31
Pfam IPR007883 EMBL-EBI Protein of unknown function DUF713 9.4E-36
Pfam IPR007883 EMBL-EBI Protein of unknown function DUF713 4.5E-31
Pfam IPR007883 EMBL-EBI Protein of unknown function DUF713 9.4E-36
Sequence
Target Sequence 
>C. ELEGANS:180458_AT
aacaatgtttcgaagcatggctgtctggaatgaggttacgacaacatttcaatgaaaaag
aacaagaagttggcaactggattaagaaatgctacaaaaaaccaatcactcggttgttga
attattatgatgatttcataaacttgaagaatatatgtgaacatgcaaactctctacatc
ccattctcaatgtccttgagaaagattgtctttctcgtgactggaagaataatcttgaaa
aagagttttccagtattaatactttaaatatacctacaactggagggctacgcaagattt
gcaaagatgcatcgttctctgattatgttaatttggaatttccgaagagaattccagaaa
gttctgtaacaattgaagatgtatcaaatagagatatcgctgagagctcgaattcggatg
ttgatcagttgtccagtttaaacttggacggcgtggtgtctcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACAATGTTTCGAAGCATGGCTGTC 554 133 776 Antisense
ATGGCTGTCTGGAATGAGGTTACGA 258 51 792 Antisense
ACCAATCACTCGGTTGTTGAATTAT 182 85 876 Antisense
TGAACATGCAAACTCTCTACATCCC 397 573 933 Antisense
TACATCCCATTCTCAATGTCCTTGA 339 643 950 Antisense
AAGATTGTCTTTCTCGTGACTGGAA 498 155 977 Antisense
ATACCTACAACTGGAGGGCTACGCA 697 21 1045 Antisense
GATGCATCGTTCTCTGATTATGTTA 362 413 1081 Antisense
GATATCGCTGAGAGCTCGAATTCGG 490 425 1168 Antisense
GATGTTGATCAGTTGTCCAGTTTAA 223 315 1192 Antisense
AACTTGGACGGCGTGGTGTCTCAAC 285 139 1216 Antisense
Sequence Source Affymetrix Proprietary Database