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[180457_at]

Description K04A8.6 /REP_DB=WormBase Gene ID /WP=CE27388 /TR=Q94251 /GB=AAC48052.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 10      4grp_highest_8_8 > 11      4grp_high_8_8 > 47      6grp_highest_nonorm > 32      6grp_total > 40      4grp_total > 48      6grp_highest_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 352
1 2 3 4 range
A 1098.3
(-3)
P 		1180.1
(0.8)
P 		1227.3
(3)
P 		1113.1
(-2.3)
P 		129
B 1104.1
(-3)
P 		1223.6
(-0.3)
P 		1373.7
(3)
P 		1107.4
(-2.9)
P 		270
C 1022.2
(-3)
P 		1220.7
(1.1)
P 		1310.6
(3)
P 		1222.5
(1.2)
P 		288
avr 1074.9
(-3) 		1208.1
(0.5) 		1303.9
(3) 		1147.7
(-1.1) 		229

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1214
1 2 3 4 5 6 range
A 1364.7
(1.3)
P 		1543.6
(3)
P 		1122.3
(-1)
P 		1261.9
(0.3)
P 		1219.8
(-0.1)
P 		912.3
(-3)
P 		631
B 1633.5
(3)
P 		1157.6
(-0.9)
P 		1604.9
(2.8)
P 		1359.5
(0.8)
P 		1128.4
(-1.1)
P 		902.6
(-3)
P 		731
C 1233.8
(-1.3)
P 		1501.4
(0)
P 		1426.2
(-0.3)
P 		2099.1
(3)
P 		1069
(-2.1)
P 		885.4
(-3)
P 		1214
avr 1410.7
(1.5) 		1400.9
(1.5) 		1384.5
(1.3) 		1573.5
(3) 		1139.1
(-0.9) 		900.1
(-3) 		673
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 294
1 2 3 4 range
A 399.9
(3)
P 		256.2
(-0.6)
P 		320.8
(1)
P 		162.9
(-3)
P 		237
B 352.1
(3)
P 		302.2
(0.4)
P 		318.3
(1.3)
P 		236
(-3)
P 		116
C 338.4
(0.2)
P 		351
(0.5)
P 		456.8
(3)
P 		206.1
(-3)
P 		251
avr 363.5
(2.9) 		303.1
(0.7) 		365.3
(3) 		201.7
(-3) 		164

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 346
1 2 3 4 5 6 range
A 251.6
(-2.5)
P 		549
(3)
P 		244.4
(-2.6)
P 		320
(-1.2)
P 		368.1
(-0.3)
P 		222.1
(-3)
P 		327
B 568.4
(3)
P 		385.3
(-1.7)
P 		389.7
(-1.6)
P 		360.1
(-2.4)
P 		458.5
(0.2)
P 		336.6
(-3)
P 		232
C 457.3
(3)
P 		458.1
(3)
P 		363
(-0.5)
P 		422.1
(1.7)
P 		345.9
(-1.2)
P 		296.4
(-3)
P 		162
avr 425.8
(1.7) 		464.1
(3) 		332.4
(-1.4) 		367.4
(-0.2) 		390.8
(0.5) 		285
(-3) 		179
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180457_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12206
Sequence Type Exemplar sequence
Representative Public ID K04A8.6 NCBI
Target Description K04A8.6 /REP_DB=WormBase Gene ID /WP=CE27388 /TR=Q94251 /GB=AAC48052.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072260(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072260 NCBI Caenorhabditis elegans K04A8.6 (K04A8.6) mRNA, complete cds. 9/11 None
SNAP00000001680 ENSEMBL cdna:SNAP chromosome:CEL140:V:6536584:6540742:-1 9/11 None
K04A8.6 ENSEMBL cdna:known chromosome:CEL140:V:6536223:6540656:-1 gene:K04A8.6 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000001698 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6536583-6540528(-) 98.81 100.0
Public Domain and Genome References
Gene Title
Ensembl K04A8.6
Entrez Gene 179045 Entrez gene
SwissProt Q94251 EMBL-EBI
WormBase CE27388 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.4874.1.S1_S_AT similar to F-box only protein 11 cfa
DROSOPHILA_2:1637743_AT dm
DROSGENOME1:153116_AT dm
CHICKEN:GGA.18901.1.S1_S_AT F-box protein 11 gga
CHICKEN:GGA.20036.1.S1_AT F-box protein 11 gga
CHICKEN:GGA.2548.1.S1_AT F-box protein 11 gga
CHICKEN:GGAAFFX.21370.1.S1_S_AT F-box protein 11 gga
CHICKEN:GGAAFFX.22732.1.S1_S_AT F-box protein 11 gga
HG-U133_PLUS_2:203255_AT F-box protein 11 hs
HG-U133A:203255_AT F-box protein 11 hs
HG-U133A_2:203255_AT F-box protein 11 hs
HG-U133_PLUS_2:219208_AT F-box protein 11 hs
HG-U133A:219208_AT F-box protein 11 hs
HG-U133A_2:219208_AT F-box protein 11 hs
HU35KSUBB:RC_Z41670_AT F-box protein 11 hs
HG-U133_PLUS_2:222119_S_AT F-box protein 11 hs
HG-U133A_2:222119_S_AT F-box protein 11 hs
HG-U133A:222119_S_AT F-box protein 11 hs
U133_X3P:G13376712_3P_AT F-box protein 11 hs
U133_X3P:G10048403_3P_AT F-box protein 11 hs
U133_X3P:HS.284289.1.S1_3P_A_AT F-box protein 11 hs
HG-U95D:88686_AT F-box protein 11 hs
HG-U133_PLUS_2:232364_AT F-box protein 11 hs
HG-U133B:232364_AT F-box protein 11 hs
HG-U133_PLUS_2:235873_AT F-box protein 11 hs
HG-U133B:235873_AT F-box protein 11 hs
HG-U95E:74695_AT F-box protein 11 hs
HU35KSUBD:RC_C21438_AT F-box protein 11 hs
HU35KSUBC:RC_AA102294_AT F-box protein 11 hs
MU11KSUBA:AA693025_S_AT F-box protein 11 mm
MOE430A:1434108_AT F-box protein 11 mm
MOUSE430A_2:1434108_AT F-box protein 11 mm
MOUSE430_2:1434108_AT F-box protein 11 mm
MU19KSUBB:TC34271_AT F-box protein 11, mRNA (cDNA clone IMAGE:4237432) mm
MU19KSUBC:TC40299_AT F-box protein 11, mRNA (cDNA clone IMAGE:4237432) mm
RG-U34C:RC_AI145603_AT F-box only protein 11 rn
RG-U34C:RC_AI233823_AT F-box only protein 11 rn
RAE230A:1376587_AT F-box only protein 11 rn
RAT230_2:1376587_AT F-box only protein 11 rn
RG-U34B:RC_AI031025_AT F-box only protein 11 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6512 ubiquitin cycle inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4842 ubiquitin-protein ligase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC48052 Hypothetical protein K04A8.6 [Caenorhabditis elegans] ref|NP_504661.1| K04A8.6 [Caenorhabditis elegans] 0.0
blast CAE71903 Hypothetical protein CBG18961 [Caenorhabditis briggsae] 0.0
blast EAA01825 ENSANGP00000008498 [Anopheles gambiae str. PEST] ref|XP_321355.2| ENSANGP00000008498 [Anopheles gambiae str. PEST] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003126 EMBL-EBI Zn-finger (putative), N-recognin 5.1E-9
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.5E-12
Pfam IPR003126 EMBL-EBI Zn-finger (putative), N-recognin 5.1E-9
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.5E-12
Sequence
Target Sequence 
>C. ELEGANS:180457_AT
gactttgcgtagcaaccggtgtcactccagtgcaacgtggaaatcgtatctatgacaacc
atgacacaatttctagagctatcaagactggcctgtgtctcttcaaagtgagcagcaaca
acagttttccgatgcacaatttctatagatgtaccacgtgtaacacgacggaacgtaatg
cgatctgcaccaactgcatcagaacatgccatcgtggtcattctgtagaacttaagaact
ttttgttgctccgctgttcggatttcgctacaaaaattaaaattgtaaattcaaattcaa
agtttctagtacaaagcgactccaaaaaaagagaaaaatcgtttattattttcttttttt
tcaataaaaataatttcagattcttctgcgactgtggtgctggaactctcgaacggcact
gtcacctgcaaaatgtgccacgtgacaacgacactgtctatgactcagcgacgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTTTGCGTAGCAACCGGTGTCAC 487 371 2450 Antisense
GGTGTCACTCCAGTGCAACGTGGAA 126 497 2467 Antisense
TCAAGACTGGCCTGTGTCTCTTCAA 13 633 2531 Antisense
AACAGTTTTCCGATGCACAATTTCT 673 135 2569 Antisense
CGTAATGCGATCTGCACCAACTGCA 123 247 2623 Antisense
GAACATGCCATCGTGGTCATTCTGT 293 351 2651 Antisense
TAAGAACTTTTTGTTGCTCCGCTGT 698 637 2682 Antisense
TTGCTCCGCTGTTCGGATTTCGCTA 354 703 2695 Antisense
ATTCTTCTGCGACTGTGGTGCTGGA 301 11 2829 Antisense
AACGGCACTGTCACCTGCAAAATGT 370 143 2861 Antisense
GACACTGTCTATGACTCAGCGACGC 382 367 2899 Antisense
Sequence Source Affymetrix Proprietary Database