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[180456_at] 7TM chemoreceptor, srw family

Description C44C3.7 /REP_DB=WormBase Gene ID /WP=CE08713 /TR=P91163 /GB=AAG23985.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 27      4grp_total > 12      6grp_cgc > 04      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 63.6
(-0.6)
A 		72.2
(-0.1)
A 		24
(-3)
A 		124.6
(3)
A 		101
B 88.7
(0.2)
A 		63
(-2.5)
A 		58.3
(-3)
A 		114.6
(3)
A 		56
C 60.7
(-1.1)
A 		34.8
(-3)
A 		52.3
(-1.7)
A 		117.7
(3)
P 		83
avr 71
(-0.9) 		56.7
(-2) 		44.9
(-3) 		119
(3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 62.2
(3)
A 		48.5
(1.4)
A 		44
(0.9)
A 		9.3
(-3)
A 		51.6
(1.8)
A 		54.3
(2.1)
A 		53
B 62.2
(0.8)
A 		81.4
(3)
A 		50.9
(-0.5)
A 		60.2
(0.6)
A 		28.5
(-3)
A 		49.2
(-0.7)
A 		53
C 55.5
(3)
A 		35.6
(0.1)
A 		15
(-3)
A 		16.4
(-2.8)
A 		34.3
(-0.1)
A 		23.6
(-1.7)
A 		41
avr 60
(3) 		55.2
(2.1) 		36.6
(-1.5) 		28.6
(-3) 		38.1
(-1.2) 		42.4
(-0.4) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 23.1
(3)
A 		15.7
(0.4)
A 		6.3
(-3)
A 		18.2
(1.3)
A 		17
B 28.3
(3)
A 		15.6
(-2.1)
A 		13.5
(-3)
A 		24.4
(1.4)
A 		15
C 20.1
(3)
A 		10
(-3)
A 		18.2
(1.9)
A 		19.8
(2.8)
P 		10
avr 23.8
(3) 		13.8
(-2.4) 		12.7
(-3) 		20.8
(1.4) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 11.5
(0.7)
A 		17.2
(3)
A 		9.6
(-0.1)
A 		2.4
(-3)
A 		15.6
(2.4)
A 		13.2
(1.4)
A 		15
B 21.6
(0.9)
A 		27.1
(3)
A 		12.3
(-2.7)
A 		16
(-1.3)
A 		11.6
(-3)
A 		18.3
(-0.4)
A 		16
C 20.6
(3)
A 		10.9
(-0.4)
A 		3.8
(-2.8)
A 		3.3
(-3)
A 		11.1
(-0.3)
A 		7.9
(-1.4)
A 		17
avr 17.9
(2.7) 		18.4
(3) 		8.6
(-2.3) 		7.2
(-3) 		12.8
(0) 		13.1
(0.2) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180456_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15302
Sequence Type Exemplar sequence
Representative Public ID C44C3.7 NCBI
Target Description C44C3.7 /REP_DB=WormBase Gene ID /WP=CE08713 /TR=P91163 /GB=AAG23985.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071412(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071412 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-139) (srw-139) mRNA, complete cds. 11/11 None
GENEFINDER00000011850 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2983904:2985236:-1 11/11 None
C44C3.7 ENSEMBL cdna:known chromosome:CEL140:V:2983904:2985236:-1 gene:C44C3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2984058-2985236(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-139
Ensembl C44C3.7
Entrez Gene 183445 Entrez gene
SwissProt Q8IFX9 EMBL-EBI
WormBase CE34531 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN73868 Serpentine receptor, class w protein 139 [Caenorhabditis elegans] ref|NP_503813.2| Serpentine Receptor, class W family member (srw-139) [Caenorhabditis elegans] 1.0E-180
blast AAB66000 Serpentine receptor, class w protein 140 [Caenorhabditis elegans] ref|NP_504385.2| Serpentine Receptor, class W family member (srw-140) [Caenorhabditis elegans] 1.0E-115
blast AAG24167 Serpentine receptor, class w protein 136 [Caenorhabditis elegans] ref|NP_503821.2| Serpentine Receptor, class W family member (srw-136) [Caenorhabditis elegans] 6.0E-61
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503813.2 9 20-39,46-63,73-90,97-119,129-151,160-179,230-252,273-292,307-329
C44C3.7 9 20-39,46-63,73-90,97-119,129-151,160-179,230-252,273-292,307-329
GENEFINDER00000011850 9 20-39,46-63,73-90,97-119,129-151,160-179,230-252,273-292,307-329
Sequence
Target Sequence 
>C. ELEGANS:180456_AT
gttattagcaatccactagtcccaaaatatataaaacttacgaaacctattggtgctttg
tacgtcatctctgtagtactattgggaagcattcctatttctgttttcgattttatgaag
tttaaaatcaatggaataatacgaccgtcccagtgtcatccaaatggaactttggtgtac
tttattaaattcagcgatgcgtttatggaaaacaatcaagctcttctgaaaatagccact
acaaccaatgcaattgtgacaaatataattccatgttttctctacccaattttcacattt
ttccttgtgacccagcttctgctagtaaacaagaataggagaagcatttcgtcttcaaaa
agctccgctgagtcactaaggacaactcatttggttttggcatttacagcaatgttcttc
gttgccgagttcccgctcggcgtgagcagttctctcgcatacctgtttttcgatgttcct
ggaattaatcattctaagatactgcgaaatgatatttacggtaattctctatgccaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTATTAGCAATCCACTAGTCCCAA 452 447 442 Antisense
TATTGGTGCTTTGTACGTCATCTCT 128 667 489 Antisense
GAAGCATTCCTATTTCTGTTTTCGA 442 341 527 Antisense
AATAATACGACCGTCCCAGTGTCAT 427 171 576 Antisense
TTCACATTTTTCCTTGTGACCCAGC 385 687 733 Antisense
GTGACCCAGCTTCTGCTAGTAAACA 244 483 748 Antisense
GCATTTCGTCTTCAAAAAGCTCCGC 168 307 785 Antisense
AAAGCTCCGCTGAGTCACTAAGGAC 99 125 800 Antisense
AGCAATGTTCTTCGTTGCCGAGTTC 130 77 849 Antisense
TTCTCTCGCATACCTGTTTTTCGAT 39 693 891 Antisense
ATTTACGGTAATTCTCTATGCCAAT 299 15 955 Antisense
Sequence Source Affymetrix Proprietary Database