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[180455_s_at]

Description Y39G8B.2 /REP_DB=WormBase Gene ID /WP=CE24244 /TR=Q9U2J5 /GB=CAB60336.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 14      4grp_high_8_8 > 61      6grp_highest_nonorm > 90      6grp_total > 04      4grp_total > 59      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 181
1 2 3 4 range
A 144.3
(0.8)
P 		203
(2.7)
P 		211.3
(3)
P 		30.1
(-3)
A 		181
B 167.5
(1.8)
P 		155.2
(1.1)
P 		187.2
(3)
P 		86.9
(-3)
P 		100
C 116.3
(-1)
P 		187.7
(3)
P 		186.4
(2.9)
P 		81.2
(-3)
P 		107
avr 142.7
(0.6) 		182
(2.4) 		195
(3) 		66.1
(-3) 		129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 142
1 2 3 4 5 6 range
A 113.3
(-2.2)
P 		151
(0.7)
P 		105.4
(-2.8)
P 		126.6
(-1.2)
P 		180.2
(3)
P 		102.8
(-3)
P 		77
B 244.9
(3)
P 		195.2
(-0.1)
P 		193.2
(-0.3)
P 		195
(-0.2)
P 		149.9
(-3)
P 		160.7
(-2.3)
P 		95
C 169.9
(3)
P 		151.4
(0.3)
P 		167.9
(2.7)
P 		161.2
(1.7)
P 		135.8
(-1.9)
P 		128.4
(-3)
P 		42
avr 176
(3) 		165.9
(1.7) 		155.5
(0.3) 		160.9
(1) 		155.3
(0.3) 		130.6
(-3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 52.6
(2.7)
P 		44.1
(1.7)
P 		55.2
(3)
P 		4.4
(-3)
A 		51
B 53.4
(3)
P 		38.3
(0.4)
P 		43.4
(1.3)
P 		18.5
(-3)
P 		35
C 38.5
(-0.1)
P 		54
(1.7)
P 		65
(3)
P 		13.7
(-3)
P 		51
avr 48.2
(2.1) 		45.5
(1.7) 		54.5
(3) 		12.2
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 20.9
(-3)
P 		53.7
(2.9)
P 		22.9
(-2.6)
P 		32.1
(-1)
P 		54.4
(3)
P 		25
(-2.3)
P 		34
B 85.2
(3)
P 		65
(-0.2)
P 		46.9
(-3)
P 		51.6
(-2.3)
P 		60.9
(-0.8)
P 		59.9
(-1)
P 		38
C 63
(3)
P 		46.2
(-0.3)
P 		42.7
(-1)
P 		32.4
(-3)
P 		44
(-0.7)
P 		43
(-0.9)
P 		31
avr 56.4
(3) 		55
(2.6) 		37.5
(-3) 		38.7
(-2.6) 		53.1
(2) 		42.6
(-1.4) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180455_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3157
Sequence Type Exemplar sequence
Representative Public ID Y39G8B.2 NCBI
Target Description Y39G8B.2 /REP_DB=WormBase Gene ID /WP=CE24244 /TR=Q9U2J5 /GB=CAB60336.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064525(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064525 NCBI Caenorhabditis elegans Y39G8B.2 (Y39G8B.2) mRNA, complete cds. 11/11 None
GENEFINDER00000038677 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13973824:13979559:-1 11/11 None
Y39G8B.2 ENSEMBL cdna:known chromosome:CEL140:II:13973582:13976113:-1 gene:Y39G8B.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038666 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13973820-13976097(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39G8B.2
Entrez Gene 175048 Entrez gene
SwissProt Q9U2J5 EMBL-EBI
WormBase CE24244 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60336 Hypothetical protein Y39G8B.2 [Caenorhabditis elegans] ref|NP_496926.1| Y39G8B.2 [Caenorhabditis elegans] 0.0
blast CAB60337 Hypothetical protein Y39G8B.3 [Caenorhabditis elegans] ref|NP_496927.1| Serpentine Receptor, class E (epsilon) family member (sre-48) [Caenorhabditis elegans] 1.0E-168
blast T26767 hypothetical protein Y39G8B.b - Caenorhabditis elegans 1.0E-147
blast T26767 hypothetical protein Y39G8B.b - Caenorhabditis elegans 1.0E-146
blast CAE73312 Hypothetical protein CBG20739 [Caenorhabditis briggsae] 1.0E-122
Protein Domains
Database ID Description E-Value
Pfam IPR001395 EMBL-EBI Aldo/keto reductase 1.2E-81
Pfam IPR001395 EMBL-EBI Aldo/keto reductase 1.2E-81
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000038677 5 61-83,103-125,130-152,192-214,221-243
Sequence
Target Sequence 
>C. ELEGANS:180455_S_AT
gaaagcgctcgaagacgcacatcgctcgggcaaaattcgctccatcgggctcgccaactt
caatattgggcaagtggaacaggtatggacgaaaggattgatcaagccagctgtacttca
agttgagatgaatcccttcttggatcaggaggaaatccggcagttctgtagggagaaagg
aattatccttaccgcgtttatgctcacagggaatccaggatctgcgctctatcggaagca
tgaggacccgaatttattgtacaatgagaccctacagtcaatcgcgaagggacatgggaa
gtccgtcgttcaagttctcgtccgatgggcaatcgatcttcgcacaactgcgctggtgaa
atcttccgaatccaaacgaatccgccaaaacatcaacattttcaagttccgcctcacttc
ccaggagattgctcgaataaaagcgctgaatatcgattttcggattctgaacccgttgct
cggcaactatgatcatccgtacttccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAGCGCTCGAAGACGCACATCGC 475 359 459 Antisense
GCACATCGCTCGGGCAAAATTCGCT 443 317 475 Antisense
GAATTATCCTTACCGCGTTTATGCT 481 325 638 Antisense
AGGGAATCCAGGATCTGCGCTCTAT 245 59 666 Antisense
GAGACCCTACAGTCAATCGCGAAGG 639 391 724 Antisense
CAAGTTCTCGTCCGATGGGCAATCG 676 183 769 Antisense
GCAATCGATCTTCGCACAACTGCGC 541 321 787 Antisense
ATCAACATTTTCAAGTTCCGCCTCA 400 27 850 Antisense
CCTCACTTCCCAGGAGATTGCTCGA 328 267 870 Antisense
TTTCGGATTCTGAACCCGTTGCTCG 326 669 916 Antisense
GCAACTATGATCATCCGTACTTCCC 59 321 941 Antisense
Sequence Source Affymetrix Proprietary Database