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[180454_s_at]

Description K03A11.5 /REP_DB=WormBase Gene ID /WP=CE18843 /TR=Q9XVU7 /GB=CAB00868.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 07      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 51      6grp_total > 08      4grp_total > 13      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 428
1 2 3 4 range
A 345.7
(-0.8)
P 		297.8
(-1.6)
P 		204
(-3)
P 		596.3
(3)
P 		392
B 498.3
(1.5)
P 		266.1
(-2.8)
P 		254
(-3)
P 		579.9
(3)
P 		326
C 399.2
(-0.3)
P 		228.3
(-2.6)
P 		203
(-3)
P 		631.2
(3)
P 		428
avr 414.4
(0) 		264.1
(-2.3) 		220.3
(-3) 		602.5
(3) 		382

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 507
1 2 3 4 5 6 range
A 821.4
(3)
P 		347
(-3)
P 		703.9
(1.5)
P 		426.6
(-2)
P 		491.4
(-1.2)
P 		392.2
(-2.4)
P 		474
B 733.5
(3)
P 		587.3
(-0.8)
P 		533.5
(-2.2)
P 		690.5
(1.9)
P 		504.3
(-3)
P 		623.1
(0.1)
P 		229
C 461.9
(-0.7)
P 		692.2
(3)
P 		336.5
(-2.7)
P 		645.5
(2.3)
P 		314.9
(-3)
P 		545.1
(0.7)
P 		377
avr 672.3
(3) 		542.2
(-0.3) 		524.6
(-0.8) 		587.5
(0.8) 		436.9
(-3) 		520.1
(-0.9) 		235
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 125.9
(3)
P 		64.6
(-2.1)
P 		53.3
(-3)
P 		87.3
(-0.2)
P 		73
B 158.9
(3)
P 		65.7
(-2.6)
P 		58.9
(-3)
P 		123.6
(0.9)
P 		100
C 132.1
(3)
P 		65.6
(-3)
P 		70.8
(-2.5)
P 		106.4
(0.7)
P 		67
avr 139
(3) 		65.3
(-2.7) 		61
(-3) 		105.8
(0.4) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 151.4
(2.8)
P 		123.4
(-0.1)
P 		153.3
(3)
P 		108.2
(-1.7)
P 		148.3
(2.5)
P 		95.5
(-3)
P 		58
B 255.2
(3)
P 		195.5
(0.2)
P 		129.5
(-3)
P 		182.9
(-0.5)
P 		204.9
(0.6)
P 		232.3
(1.9)
P 		126
C 171.2
(1.1)
P 		211.2
(3)
P 		85.7
(-3)
P 		129.8
(-0.9)
P 		101.9
(-2.2)
P 		182.5
(1.6)
P 		126
avr 192.6
(3) 		176.7
(1.6) 		122.8
(-3) 		140.3
(-1.5) 		151.7
(-0.5) 		170.1
(1.1) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180454_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17978
Sequence Type Exemplar sequence
Representative Public ID K03A11.5 NCBI
Target Description K03A11.5 /REP_DB=WormBase Gene ID /WP=CE18843 /TR=Q9XVU7 /GB=CAB00868.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077766(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077766 NCBI Caenorhabditis elegans K03A11.5 (K03A11.5) mRNA, complete cds. 11/11 None
GENEFINDER00000007883 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13051982:13067155:1 9/11 None
SNAP00000007876 ENSEMBL cdna:SNAP chromosome:CEL140:X:13065329:13066374:1 11/11 None
K03A11.5 ENSEMBL cdna:known chromosome:CEL140:X:13065357:13066795:1 gene:K03A11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13065356-13066514(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K03A11.5
Entrez Gene 181436 Entrez gene
SwissProt Q9XVU7 EMBL-EBI
WormBase CE34049 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00865 Hypothetical protein K03A11.1 [Caenorhabditis elegans] ref|NP_510166.1| K03A11.1 [Caenorhabditis elegans] 0.0
blast CAE61376 Hypothetical protein CBG05220 [Caenorhabditis briggsae] 2.0E-77
blast CAB00868 Hypothetical protein K03A11.5 [Caenorhabditis elegans] ref|NP_510167.2| K03A11.5 [Caenorhabditis elegans] 1.0E-68
blast CAB00868 Hypothetical protein K03A11.5 [Caenorhabditis elegans] ref|NP_510167.2| K03A11.5 [Caenorhabditis elegans] 7.0E-67
blast CAE61376 Hypothetical protein CBG05220 [Caenorhabditis briggsae] 2.0E-61
blast CAE61376 Hypothetical protein CBG05220 [Caenorhabditis briggsae] 3.0E-61
blast CAB00868 Hypothetical protein K03A11.5 [Caenorhabditis elegans] ref|NP_510167.2| K03A11.5 [Caenorhabditis elegans] 6.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 8.0E-11
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 7.9E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510167.2 1 90-112
K03A11.5 1 90-112
GENEFINDER00000007883 1 1202-1224
SNAP00000007876 1 109-131
Sequence
Target Sequence 
>C. ELEGANS:180454_S_AT
tcctgctgcttcaatcaacctagcgaatggtgtaatcaacttaaatgcaaaaatagggag
cccgatttctcgaacgcgaatacaacatgcgtgtgtcatcacaacccatcggattatccc
tatgacatatgcaaaaatttgtacccaagggaaagtaattttgcgaaccgacaagctatt
cttgataagagccgagaaaaatcgcaaggaagggtcgagtacgttgaactactcggaaaa
aaggtgtctacttcagtggttagctacataattgttggactactgctgtcagtttcagtg
ctcactcttgtgatgctagttcttggcggaaaacgacttcgacaaaaacgagctgataga
caacgccaaattcggttagcaagggaaacactgattcttcaacgagccgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTGCTGCTTCAATCAACCTAGCG 607 593 25 Antisense
AGCCCGATTTCTCGAACGCGAATAC 236 83 83 Antisense
CATGCGTGTGTCATCACAACCCATC 156 211 110 Antisense
TCACAACCCATCGGATTATCCCTAT 663 627 123 Antisense
TTTGCGAACCGACAAGCTATTCTTG 113 669 184 Antisense
GGTGTCTACTTCAGTGGTTAGCTAC 324 497 267 Antisense
GGACTACTGCTGTCAGTTTCAGTGC 26 525 301 Antisense
GTTTCAGTGCTCACTCTTGTGATGC 117 451 316 Antisense
CTTGTGATGCTAGTTCTTGGCGGAA 592 217 331 Antisense
GACAACGCCAAATTCGGTTAGCAAG 98 365 383 Antisense
AACACTGATTCTTCAACGAGCCGAT 182 135 411 Antisense
Sequence Source Affymetrix Proprietary Database