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[180453_at]

Description F53A9.1 /REP_DB=WormBase Gene ID /WP=CE02760 /TR=Q20690 /GB=AAC46556.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 94      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 59      6grp_total > 95      4grp_total > 02      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18260
1 2 3 4 range
A 1116.9
(-2.9)
P 		766.1
(-3)
P 		885.1
(-3)
P 		19026.3
(3)
P 		18260
B 1077
(-2.9)
P 		927.3
(-3)
P 		842.4
(-3)
P 		17257.6
(3)
P 		16415
C 1174.3
(-2.8)
P 		881.1
(-3)
P 		782.4
(-3)
P 		16101.6
(3)
P 		15319
avr 1122.7
(-2.9) 		858.2
(-3) 		836.6
(-3) 		17461.8
(3) 		16625

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4244
1 2 3 4 5 6 range
A 1680.9
(-2.9)
P 		1630.5
(-3)
P 		2315.2
(-1.5)
P 		3880.1
(1.9)
P 		4325.8
(2.8)
P 		4397.9
(3)
P 		2767
B 1685.8
(-3)
P 		1796.2
(-2.8)
P 		2532.3
(-1.4)
P 		3552.4
(0.5)
P 		4736.8
(2.7)
P 		4921.6
(3)
P 		3236
C 1484
(-3)
P 		1723.6
(-2.7)
P 		1958.1
(-2.3)
P 		4148.9
(0.8)
P 		4677.3
(1.5)
P 		5727.8
(3)
P 		4244
avr 1616.9
(-3) 		1716.8
(-2.8) 		2268.5
(-1.8) 		3860.5
(1) 		4580
(2.2) 		5015.8
(3) 		3399
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3511
1 2 3 4 range
A 406.7
(-2.4)
P 		166.3
(-3)
P 		231.4
(-2.9)
P 		2785.1
(3)
P 		2619
B 343.4
(-2.7)
P 		229
(-2.9)
P 		195.2
(-3)
P 		3677.6
(3)
P 		3482
C 388.7
(-2.7)
P 		253.3
(-3)
P 		272.7
(-3)
P 		2715
(3)
P 		2462
avr 379.6
(-2.7) 		216.2
(-3) 		233.1
(-3) 		3059.2
(3) 		2843

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1615
1 2 3 4 5 6 range
A 309.9
(-3)
P 		579.9
(-1.4)
P 		504.2
(-1.8)
P 		984.1
(1.1)
P 		1305.3
(3)
P 		1070.8
(1.6)
P 		995
B 586.6
(-3)
P 		597.9
(-2.9)
P 		614.9
(-2.9)
P 		940.9
(-1.4)
P 		1924.5
(3)
P 		1835.2
(2.6)
P 		1338
C 550
(-2.8)
P 		525.9
(-2.9)
P 		498.4
(-3)
P 		834.3
(-1.6)
P 		1513.5
(1.3)
P 		1917.4
(3)
P 		1419
avr 482.2
(-3) 		567.9
(-2.5) 		539.2
(-2.7) 		919.8
(-0.7) 		1581.1
(2.9) 		1607.8
(3) 		1126
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180453_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16575
Sequence Type Exemplar sequence
Representative Public ID F53A9.1 NCBI
Target Description F53A9.1 /REP_DB=WormBase Gene ID /WP=CE02760 /TR=Q20690 /GB=AAC46556.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077073(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077073 NCBI Caenorhabditis elegans F53A9.1 (F53A9.1) mRNA, complete cds. 11/11 None
SNAP00000001075 ENSEMBL cdna:SNAP chromosome:CEL140:X:8711533:8711766:1 11/11 None
GENEFINDER00000001090 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8711533:8711766:1 11/11 None
F53A9.1 ENSEMBL cdna:known chromosome:CEL140:X:8711533:8711766:1 gene:F53A9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8711531-8711765(+) 87.18 100.0
Public Domain and Genome References
Gene Title
Ensembl F53A9.1
Entrez Gene 186142 Entrez gene
SwissProt Q20690 EMBL-EBI
WormBase CE02760 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8237 metallopeptidase activity inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Sequence
Target Sequence 
>C. ELEGANS:180453_AT
ggatacaatccttatggagcatctggatatgcaccaccaccggtctacggagctccagga
tatatgccaccacaaactgttcatgtccatactgatggaggacatcatcatggtcaccac
catcaccaccatggatttcttcatgagttgggacatgccatgactgggcaccatcatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATACAATCCTTATGGAGCATCTG 465 511 34 Antisense
GGAGCATCTGGATATGCACCACCAC 367 519 49 Antisense
GCTCCAGGATATATGCCACCACAAA 86 299 85 Antisense
CAGGATATATGCCACCACAAACTGT 280 209 89 Antisense
GTCCATACTGATGGAGGACATCATC 327 477 118 Antisense
CACCATCACCACCATGGATTTCTTC 463 201 151 Antisense
ATCACCACCATGGATTTCTTCATGA 186 29 155 Antisense
CACCATGGATTTCTTCATGAGTTGG 623 201 160 Antisense
GAGTTGGGACATGCCATGACTGGGC 478 397 178 Antisense
GGGACATGCCATGACTGGGCACCAT 697 493 183 Antisense
CATGCCATGACTGGGCACCATCATC 158 211 187 Antisense
Sequence Source Affymetrix Proprietary Database