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[180452_at] Lectin C-type domain /// Lectin C-type domain

Description H02K04.1 /REP_DB=WormBase Gene ID /WP=CE16164 /TR=O45993 /GB=CAA19425.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 10      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 243
1 2 3 4 range
A 6.1
(-3)
A 		73.7
(-1.3)
A 		53.6
(-1.8)
A 		248.9
(3)
A 		243
B 6.6
(-3)
A 		12.4
(-2.8)
A 		22.6
(-2.4)
A 		176.4
(3)
A 		170
C 29.7
(-3)
A 		75.2
(-1.2)
A 		28.9
(-3)
A 		183.3
(3)
A 		154
avr 14.1
(-3) 		53.8
(-1.7) 		35
(-2.3) 		202.9
(3) 		189

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 222
1 2 3 4 5 6 range
A 8.1
(-2.9)
A 		4.9
(-3)
A 		7.3
(-2.9)
A 		195.7
(2.2)
A 		223.6
(3)
A 		98.8
(-0.4)
A 		219
B 18.8
(-2.6)
A 		5.8
(-3)
A 		9.7
(-2.9)
A 		158.4
(1.2)
A 		225.2
(3)
P 		73.4
(-1.2)
A 		219
C 3.2
(-3)
A 		3.6
(-3)
A 		3.5
(-3)
A 		193.1
(2.4)
A 		216
(3)
A 		49.4
(-1.7)
A 		213
avr 10
(-2.9) 		4.8
(-3) 		6.8
(-2.9) 		182.4
(1.9) 		221.6
(3) 		73.9
(-1.1) 		217
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 2.2
(-3)
A 		16
(-0.6)
A 		14
(-0.9)
A 		36.4
(3)
A 		34
B 2.1
(-3)
A 		3.1
(-2.8)
A 		5.2
(-2.5)
A 		37.6
(3)
A 		36
C 9.8
(-3)
A 		21.6
(0.4)
A 		10.1
(-2.9)
A 		30.9
(3)
A 		21
avr 4.7
(-3) 		13.6
(-1.2) 		9.8
(-2) 		35
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 1.5
(-3)
A 		1.8
(-3)
A 		1.6
(-3)
A 		49.6
(1.4)
A 		67.5
(3)
A 		24.1
(-0.9)
A 		66
B 6.5
(-2.7)
A 		1.9
(-3)
A 		2.4
(-3)
A 		42
(-0.3)
A 		91.5
(3)
P 		27.4
(-1.3)
A 		90
C 1.2
(-3)
A 		1.1
(-3)
A 		0.9
(-3)
A 		38.8
(0.3)
A 		69.9
(3)
A 		16.5
(-1.6)
A 		69
avr 3.1
(-2.9) 		1.6
(-3) 		1.6
(-3) 		43.5
(0.4) 		76.3
(3) 		22.7
(-1.3) 		75
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180452_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13910
Sequence Type Exemplar sequence
Representative Public ID H02K04.1 NCBI
Target Description H02K04.1 /REP_DB=WormBase Gene ID /WP=CE16164 /TR=O45993 /GB=CAA19425.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074403, NM_001028834
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000015350 ENSEMBL cdna:SNAP chromosome:CEL140:V:15342863:15343823:-1 None
GENEFINDER00000015352 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15341373:15341921:-1 None
GENEFINDER00000015353 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15342776:15343823:-1 None
NM_001028834 NCBI Caenorhabditis elegans H02K04.2 (H02K04.2) mRNA, complete cds. None
NM_074403 NCBI Caenorhabditis elegans H02K04.1 (H02K04.1) mRNA, complete cds. None
H02K04.2 ENSEMBL cdna:known chromosome:CEL140:V:15341155:15341987:-1 gene:H02K04.2 None
H02K04.1 ENSEMBL cdna:known chromosome:CEL140:V:15342863:15343883:-1 gene:H02K04.1 None
SNAP00000015349 ENSEMBL cdna:SNAP chromosome:CEL140:V:15341373:15341921:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15341154-15343823(-) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain
Lectin C-type domain
Ensembl H02K04.2
H02K04.1
Entrez Gene 186672 Entrez gene
3565978 Entrez gene
SwissProt Q7K7K8 EMBL-EBI
Q5DTE9 EMBL-EBI
WormBase CE38082 Wormbase
CE38083 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAI58637 Hypothetical protein H02K04.2 [Caenorhabditis elegans] emb|CAI58661.1| Hypothetical protein H02K04.2 [Caenorhabditis elegans] ref|NP_001024005.1| H02K04.2 [Caenorhabditis elegans] 1.0E-107
blast CAA19425 Hypothetical protein H02K04.1 [Caenorhabditis elegans] ref|NP_506804.2| H02K04.1 [Caenorhabditis elegans] 2.0E-97
blast T23033 hypothetical protein H02K04.1 - Caenorhabditis elegans 2.0E-88
blast CAA19425 Hypothetical protein H02K04.1 [Caenorhabditis elegans] ref|NP_506804.2| H02K04.1 [Caenorhabditis elegans] 5.0E-86
blast CAA19425 Hypothetical protein H02K04.1 [Caenorhabditis elegans] ref|NP_506804.2| H02K04.1 [Caenorhabditis elegans] 7.0E-86
blast CAA19425 Hypothetical protein H02K04.1 [Caenorhabditis elegans] ref|NP_506804.2| H02K04.1 [Caenorhabditis elegans] 9.0E-76
Sequence
Target Sequence 
>C. ELEGANS:180452_AT
gaatggatttgagactgccgctgaaagaactcagtttttgaatgacgtgatgactgtcaa
tctggctccgtacaattttgttcatatcggtgcaatgagagtatgtgcagcgccaccgtg
tgcagttacagatccgcctgtatgccctgatggctggttctcattccaacgtacaaatgg
tttgtggtgctatataatcgcaacacctccggctgatggctttggagccgggggagctca
acaatattgccaggataatcaacagggatccttcttgaatgggtttgagactgctgctga
aagaactcagtttataagcgatctgaatactgtcgatatagccccgtataattttgttct
cattggtgcaaagagagtatgtgcagttgagccatgtgccacgacagatccgtatgaatg
gcaaaatggggtgtccacgaacaatgctcttgccggtgactttatgccgttctacgatgg
gaccggcgattgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGGATTTGAGACTGCCGCTGAA 417 333 213 Antisense
AATCTGGCTCCGTACAATTTTGTTC 484 169 271 Antisense
CCACCGTGTGCAGTTACAGATCCGC 23 275 325 Antisense
GCCTGTATGCCCTGATGGCTGGTTC 440 283 348 Antisense
ACACCTCCGGCTGATGGCTTTGGAG 544 103 415 Antisense
GAATGGGTTTGAGACTGCTGCTGAA 267 333 489 Antisense
CTGAATACTGTCGATATAGCCCCGT 531 237 535 Antisense
TGCAGTTGAGCCATGTGCCACGACA 189 577 594 Antisense
TCCACGAACAATGCTCTTGCCGGTG 297 589 646 Antisense
TGCCGGTGACTTTATGCCGTTCTAC 285 583 663 Antisense
GTTCTACGATGGGACCGGCGATTGT 484 441 681 Antisense
Sequence Source Affymetrix Proprietary Database