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[180451_at] 7TM chemoreceptor, srw family

Description T05E12.4 /REP_DB=WormBase Gene ID /WP=CE21150 /TR=Q9XUR5 /GB=CAB04687.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 18      6grp_cgc > 56      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 3.6
(-3)
A 		37.1
(-0.2)
A 		4.8
(-2.9)
A 		76.4
(3)
A 		73
B 3.9
(-3)
A 		6.5
(-2.6)
A 		11.1
(-2)
A 		46.5
(3)
A 		43
C 3.1
(-3)
A 		7.8
(-2.3)
A 		6.1
(-2.6)
A 		46.3
(3)
A 		43
avr 3.5
(-3) 		17.1
(-1.5) 		7.3
(-2.6) 		56.4
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 1.9
(-3)
A 		3.4
(-2.5)
A 		17.6
(2.4)
A 		5.5
(-1.8)
A 		19.3
(3)
A 		7.3
(-1.1)
A 		17
B 4.2
(-2.6)
A 		5.3
(-2.4)
A 		34.9
(3)
A 		2
(-3)
A 		5.9
(-2.3)
A 		6.9
(-2.1)
A 		33
C 3.8
(-2.6)
A 		7.4
(-1.7)
A 		8.9
(-1.3)
A 		2.1
(-3)
A 		5
(-2.3)
A 		26.4
(3)
A 		24
avr 3.3
(-3) 		5.4
(-2.2) 		20.5
(3) 		3.2
(-3) 		10.1
(-0.6) 		13.5
(0.6) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.3
(-3)
A 		8.1
(1.1)
A 		1.3
(-3)
A 		11.2
(3)
A 		10
B 1.3
(-3)
A 		1.6
(-2.8)
A 		2.6
(-2.1)
A 		9.9
(3)
A 		9
C 1
(-3)
A 		2.2
(-1.9)
A 		2.1
(-2)
A 		7.8
(3)
A 		7
avr 1.2
(-3) 		4
(-1) 		2
(-2.4) 		9.6
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.4
(-3)
A 		1.2
(-2.1)
A 		3.8
(0.8)
A 		1.4
(-1.9)
A 		5.8
(3)
A 		1.8
(-1.4)
A 		5
B 1.5
(-2.3)
A 		1.8
(-2)
A 		8.5
(3)
A 		0.5
(-3)
A 		2.4
(-1.6)
A 		2.6
(-1.4)
A 		8
C 1.4
(-2.3)
A 		2.2
(-1.7)
A 		2.3
(-1.7)
A 		0.4
(-3)
A 		1.6
(-2.2)
A 		8.9
(3)
A 		9
avr 1.1
(-2.6) 		1.7
(-1.7) 		4.9
(3) 		0.8
(-3) 		3.3
(0.7) 		4.4
(2.3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180451_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12589
Sequence Type Exemplar sequence
Representative Public ID T05E12.4 NCBI
Target Description T05E12.4 /REP_DB=WormBase Gene ID /WP=CE21150 /TR=Q9XUR5 /GB=CAB04687.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074924(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074924 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-20) (srw-20) mRNA, complete cds. 11/11 None
SNAP00000044441 ENSEMBL cdna:SNAP chromosome:CEL140:V:17081043:17082473:-1 10/11 None
T05E12.4 ENSEMBL cdna:known chromosome:CEL140:V:17080835:17082473:-1 gene:T05E12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17080834-17082473(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-20
Ensembl T05E12.4
Entrez Gene 188136 Entrez gene
SwissProt Q9XUR5 EMBL-EBI
WormBase CE21150 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04687 Hypothetical protein T05E12.4 [Caenorhabditis elegans] ref|NP_507325.1| Serpentine Receptor, class W family member (srw-20) [Caenorhabditis elegans] 1.0E-179
blast CAB04687 Hypothetical protein T05E12.4 [Caenorhabditis elegans] ref|NP_507325.1| Serpentine Receptor, class W family member (srw-20) [Caenorhabditis elegans] 1.0E-146
blast CAD89721 Hypothetical protein C06B8.9 [Caenorhabditis elegans] ref|NP_001021374.1| Serpentine Receptor, class W family member (srw-21) [Caenorhabditis elegans] 1.0E-63
blast CAD89721 Hypothetical protein C06B8.9 [Caenorhabditis elegans] ref|NP_001021374.1| Serpentine Receptor, class W family member (srw-21) [Caenorhabditis elegans] 3.0E-51
blast CAE71640 Hypothetical protein CBG18607 [Caenorhabditis briggsae] 3.0E-36
blast CAB04420 Hypothetical protein F49A5.8 [Caenorhabditis elegans] ref|NP_507264.2| Serpentine Receptor, class W family member (srw-23) [Caenorhabditis elegans] 9.0E-29
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507325.1 8 13-30,40-62,83-105,109-128,141-163,202-224,254-276,291-313
T05E12.4 8 13-30,40-62,83-105,109-128,141-163,202-224,254-276,291-313
SNAP00000044441 7 13-30,40-62,83-105,109-128,141-163,202-224,253-275
Sequence
Target Sequence 
>C. ELEGANS:180451_AT
atcgctgtatttatttttgtcatgttcgtggactttacagaattggctatgacttatcga
atcaaatggcttcctagtatacttttttataataatagcaagtccaaaccagaatggcag
cattatgtactagtcgattgttttagctgtgttacatcactccaaatacacattagcata
tgttctcgtttcgtaccatctttaatatacccgattctcacaaccatattgattttgcaa
cttcgaacaattaagaagagaaaagcaaatttgcttaagtccaccagctcgaatcagtcc
gataataagttcaaaatgatattatggctgacaattacatttatgctatctgaaggatta
actggttttacaggatggatgcaattatataatatgaatattcatattgatactagtcaa
aagttcgcgagattttgggtatcgacttattatgcaatgttcacggtgagagctgtaaat
tcattatcacatattctaatatgtgccctgatgtcgacggtgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGCTGTATTTATTTTTGTCATGT 572 37 451 Antisense
TTGTCATGTTCGTGGACTTTACAGA 700 705 467 Antisense
CAAATGGCTTCCTAGTATACTTTTT 97 193 513 Antisense
GGCAGCATTATGTACTAGTCGATTG 660 533 566 Antisense
GTTTTAGCTGTGTTACATCACTCCA 341 449 590 Antisense
TTAGCATATGTTCTCGTTTCGTACC 661 681 623 Antisense
TTCTCGTTTCGTACCATCTTTAATA 555 691 633 Antisense
ATATACCCGATTCTCACAACCATAT 33 21 655 Antisense
GCAAATTTGCTTAAGTCCACCAGCT 707 317 715 Antisense
TCCACCAGCTCGAATCAGTCCGATA 315 589 730 Antisense
TATGTGCCCTGATGTCGACGGTGTA 483 655 950 Antisense
Sequence Source Affymetrix Proprietary Database