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[180450_at]

Description F52E1.5 /REP_DB=WormBase Gene ID /WP=CE04633 /TR=Q20659 /GB=AAB37041.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 85      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 48      6grp_total > 86      4grp_total > 60      6grp_cgc > 57      6grp_total_sub > Increase      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3339
1 2 3 4 range
A 3407.4
(0.4)
P 		4756.5
(3)
P 		4287
(2.1)
P 		1637.5
(-3)
P 		3119
B 4280.8
(1.2)
P 		4093.9
(0.7)
P 		4976.5
(3)
P 		2649.4
(-3)
P 		2327
C 4491.4
(3)
P 		4488.1
(3)
P 		4198.7
(2)
P 		2669.4
(-3)
P 		1822
avr 4059.9
(1.8) 		4446.2
(2.9) 		4487.4
(3) 		2318.8
(-3) 		2169

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2282
1 2 3 4 5 6 range
A 2424.6
(-3)
P 		3530.3
(-0.1)
P 		4070.9
(1.3)
P 		3882.3
(0.8)
P 		3725.5
(0.4)
P 		4706.4
(3)
P 		2282
B 2611.9
(-3)
P 		3448.1
(0.1)
P 		3800.8
(1.4)
P 		3462
(0.2)
P 		3481.5
(0.2)
P 		4224.4
(3)
P 		1613
C 2991.9
(-3)
P 		3081.4
(-2.7)
P 		3709.9
(-0.2)
P 		3415.1
(-1.4)
P 		4547.7
(3)
P 		4291.1
(2)
P 		1556
avr 2676.1
(-3) 		3353.3
(-0.7) 		3860.5
(1.1) 		3586.5
(0.2) 		3918.2
(1.3) 		4407.3
(3) 		1731
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1247
1 2 3 4 range
A 1240.6
(3)
P 		1032.5
(1.8)
P 		1120.7
(2.3)
P 		239.7
(-3)
P 		1001
B 1365.1
(3)
P 		1011.1
(0.3)
P 		1153.2
(1.4)
P 		564.6
(-3)
P 		801
C 1486.8
(3)
P 		1290.3
(1.9)
P 		1463.4
(2.9)
P 		450.1
(-3)
P 		1037
avr 1364.2
(3) 		1111.3
(1.4) 		1245.8
(2.2) 		418.1
(-3) 		946

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1128
1 2 3 4 5 6 range
A 446.9
(-3)
P 		1255.5
(3)
P 		886.6
(0.3)
P 		984.6
(1)
P 		1124.2
(2)
P 		1145.9
(2.2)
P 		809
B 908.8
(-3)
P 		1147.7
(-0.8)
P 		923
(-2.9)
P 		917
(-2.9)
P 		1414.5
(1.6)
P 		1575.2
(3)
P 		666
C 1109
(0.2)
P 		940.2
(-1.1)
P 		944.2
(-1)
P 		686.8
(-3)
P 		1471.6
(3)
P 		1436.5
(2.7)
P 		785
avr 821.6
(-3) 		1114.5
(0.1) 		917.9
(-2) 		862.8
(-2.6) 		1336.8
(2.5) 		1385.9
(3) 		564
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180450_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11497
Sequence Type Exemplar sequence
Representative Public ID F52E1.5 NCBI
Target Description F52E1.5 /REP_DB=WormBase Gene ID /WP=CE04633 /TR=Q20659 /GB=AAB37041.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072763(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072763 NCBI Caenorhabditis elegans F52E1.5 (F52E1.5) mRNA, complete cds. 11/11 A 
SNAP00000034420 ENSEMBL cdna:SNAP chromosome:CEL140:V:8386534:8387397:1 11/11 None
GENEFINDER00000034438 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8382110:8387397:1 10/11 None
F52E1.5 ENSEMBL cdna:known chromosome:CEL140:V:8382096:8387446:1 gene:F52E1.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8386534-8387398(+) 100.0 100.0
Public Domain and Genome References
Ensembl F52E1.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM45372 Hypothetical protein F52E1.5a [Caenorhabditis elegans] ref|NP_505164.3| F52E1.5 [Caenorhabditis elegans] 0.0
blast AAM45372 Hypothetical protein F52E1.5a [Caenorhabditis elegans] ref|NP_505164.3| F52E1.5 [Caenorhabditis elegans] 1.0E-107
blast AAM45372 Hypothetical protein F52E1.5a [Caenorhabditis elegans] ref|NP_505164.3| F52E1.5 [Caenorhabditis elegans] 1.0E-105
blast CAE66060 Hypothetical protein CBG11273 [Caenorhabditis briggsae] 8.0E-74
blast CAE66060 Hypothetical protein CBG11273 [Caenorhabditis briggsae] 1.0E-73
blast CAE66060 Hypothetical protein CBG11273 [Caenorhabditis briggsae] 3.0E-73
blast CAE66062 Hypothetical protein CBG11275 [Caenorhabditis briggsae] 3.0E-70
Sequence
Target Sequence 
>C. ELEGANS:180450_AT
tgctctcgtgttttgtttgtcttgctctcgacttttacagttttggctggagccagtgtt
acctgtgatttgacacaaaaaccttctacatgggcacaagtacatgctaagaatatcttc
ttcaatgcttatgagccagataattatttcagtttgaatggattctgtgtcaataacgac
tttatgtcacatactctcacttattcttcccatgtgaagcttgctgattcttctgtaaaa
gtcaagaccgacgttgcacttaataccaactttgacgcttcactttccaattgcggaaaa
gatgtatcccaagttcaatggtgtcaatctcattgtcaagataaaacactcgaaaacgtc
attgtatcatctgcagttatcaatggaagtcttccacttgctctagcacaacaggttttc
tcaacgattggatcaccaaacgatacttcaatcgcttcaatgcaagttgatttaaactca
caaggagttcgaatcgattatgattattatgatgatttcaacttctgctcagtttatgtg
aaagtgaagaggccatccatgttccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTCTCGTGTTTTGTTTGTCTTGC 508 581 16 Antisense
TGGCTGGAGCCAGTGTTACCTGTGA 148 543 59 Antisense
ATGTCACATACTCTCACTTATTCTT 233 49 199 Antisense
AAGACCGACGTTGCACTTAATACCA 343 1 259 Antisense
AACTTTGACGCTTCACTTTCCAATT 7 139 283 Antisense
AAAACGTCATTGTATCATCTGCAGT 217 131 368 Antisense
TCTTCCACTTGCTCTAGCACAACAG 651 617 405 Antisense
GCACAACAGGTTTTCTCAACGATTG 75 317 421 Antisense
GATACTTCAATCGCTTCAATGCAAG 267 423 457 Antisense
ATGATGATTTCAACTTCTGCTCAGT 530 45 524 Antisense
AAGTGAAGAGGCCATCCATGTTCCC 108 159 557 Antisense
Sequence Source Affymetrix Proprietary Database