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[180449_at]

Description Y40H7A.5 /REP_DB=WormBase Gene ID /WP=CE21816 /TR=Q9XWA0 /GB=CAA22066.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 23      4grp_total > 45      6grp_cgc > 70      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 173
1 2 3 4 range
A 107
(3)
A 		92.2
(1.3)
A 		55.3
(-3)
A 		103.1
(2.5)
A 		52
B 191.3
(3)
A 		128.4
(0.8)
A 		77.6
(-0.9)
A 		18.1
(-3)
A 		173
C 136.2
(1.4)
A 		169.4
(3)
A 		44.4
(-3)
A 		86.3
(-1)
A 		125
avr 144.8
(3) 		130
(2) 		59.1
(-3) 		69.2
(-2.3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 253
1 2 3 4 5 6 range
A 272.5
(3)
A 		176.5
(0.7)
P 		257.3
(2.6)
A 		117.1
(-0.7)
A 		139.9
(-0.1)
A 		19.1
(-3)
A 		253
B 241.3
(3)
A 		187.3
(0.9)
A 		179.8
(0.6)
A 		162
(-0.1)
A 		101.5
(-2.4)
A 		87
(-3)
A 		154
C 210
(3)
A 		209.9
(3)
A 		179.2
(1.6)
A 		164.2
(1)
A 		111.7
(-1.4)
A 		74.8
(-3)
A 		135
avr 241.3
(3) 		191.2
(1.3) 		205.4
(1.8) 		147.8
(-0.1) 		117.7
(-1.1) 		60.3
(-3) 		181
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 39
(3)
A 		20
(-1.6)
A 		14.4
(-3)
A 		15.1
(-2.8)
A 		25
B 61
(3)
A 		31.7
(-0.1)
A 		18
(-1.5)
A 		3.9
(-3)
A 		57
C 45.1
(2.4)
A 		48.7
(3)
A 		15.5
(-2.8)
A 		14.6
(-3)
A 		34
avr 48.4
(3) 		33.5
(0.6) 		16
(-2.2) 		11.2
(-3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 50.2
(1.7)
A 		62.8
(3)
P 		56
(2.3)
A 		29.7
(-0.4)
A 		42.2
(0.9)
A 		4.6
(-3)
A 		58
B 83.9
(3)
A 		62.3
(0.5)
A 		43.7
(-1.7)
A 		42.9
(-1.8)
A 		41.2
(-2)
A 		32.4
(-3)
A 		52
C 77.8
(3)
A 		64
(1.4)
A 		45.6
(-0.7)
A 		33
(-2.1)
A 		36.1
(-1.7)
A 		25
(-3)
A 		53
avr 70.6
(3) 		63
(2.1) 		48.4
(0.3) 		35.2
(-1.3) 		39.8
(-0.7) 		20.7
(-3) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180449_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10266
Sequence Type Exemplar sequence
Representative Public ID Y40H7A.5 NCBI
Target Description Y40H7A.5 /REP_DB=WormBase Gene ID /WP=CE21816 /TR=Q9XWA0 /GB=CAA22066.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070431(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070431 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-23) (srd-23) mRNA, complete cds. 11/11 None
SNAP00000019402 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15181936:15182915:1 11/11 None
GENEFINDER00000019411 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15179884:15182915:1 11/11 None
Y40H7A.5 ENSEMBL cdna:known chromosome:CEL140:IV:15179884:15182915:1 gene:Y40H7A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15179889-15182921(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srd-23
Ensembl Y40H7A.5
Entrez Gene 189804 Entrez gene
SwissProt Q9XWA0 EMBL-EBI
WormBase CE21816 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22066 Hypothetical protein Y40H7A.5 [Caenorhabditis elegans] ref|NP_502832.1| Serpentine Receptor, class D (delta) family member (srd-23) [Caenorhabditis elegans] 0.0
blast CAE68107 Hypothetical protein CBG13750 [Caenorhabditis briggsae] 1.0E-148
blast CAE68107 Hypothetical protein CBG13750 [Caenorhabditis briggsae] 1.0E-145
blast CAA22066 Hypothetical protein Y40H7A.5 [Caenorhabditis elegans] ref|NP_502832.1| Serpentine Receptor, class D (delta) family member (srd-23) [Caenorhabditis elegans] 1.0E-139
blast CAE68107 Hypothetical protein CBG13750 [Caenorhabditis briggsae] 1.0E-107
blast CAB03433 Hypothetical protein T26E4.12 [Caenorhabditis elegans] ref|NP_506942.1| Serpentine Receptor, class D (delta) family member (srd-27) [Caenorhabditis elegans] 7.0E-92
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502832.1 7 5-27,70-92,102-119,126-148,178-200,233-255,265-287
Y40H7A.5 7 5-27,70-92,102-119,126-148,178-200,233-255,265-287
SNAP00000019402 5 20-39,46-68,98-120,153-175,185-207
GENEFINDER00000019411 7 5-27,71-93,113-135,142-164,194-216,249-271,281-303
Sequence
Target Sequence 
>C. ELEGANS:180449_AT
cctctatgtctgtgatccttcaatcaaaagcatcatcttcgccgcatttcttgtctatac
cccgagctttgttcacatggcaatgtggattaagttgttcgatgcagagcagatggaaat
taaaatgaatgaaactgaactttttgccaacgagctggaatttccagagatgcagctaac
cggccgtatagtgtattggagttcaattgtcgtctacgttcaactcgtgttcacagcgct
tttggttgtaatcgcctacacctggataagaaatgtgctcattaactttctcataagcat
gggagtctctctctccaaggatgtcaagattatcaatcggcaattggttaagatcctaac
attccaagtgtgcattcccatctggatcttcctcggtgtcttcttcttcctcgccatgta
cacccaatccactcgacccgacactctacagtatgccatcacaatttctttcatgttggc
tccagttgtctcaccatttgcgtacatcttctttgtaccccattactggaacttttgcat
tggcaagaaatatgttgctccagcaaattcatcgatttgtggaacctcggcgact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTCTATGTCTGTGATCCTTCAATC 575 267 357 Antisense
ATGCAGCTAACCGGCCGTATAGTGT 493 39 526 Antisense
ATTGTCGTCTACGTTCAACTCGTGT 224 5 562 Antisense
CAACTCGTGTTCACAGCGCTTTTGG 500 187 577 Antisense
GGAGTCTCTCTCTCCAAGGATGTCA 123 517 658 Antisense
CCAAGTGTGCATTCCCATCTGGATC 246 277 720 Antisense
GACACTCTACAGTATGCCATCACAA 336 367 796 Antisense
AATTTCTTTCATGTTGGCTCCAGTT 338 175 819 Antisense
TTGTCTCACCATTTGCGTACATCTT 382 707 842 Antisense
GTACATCTTCTTTGTACCCCATTAC 130 461 858 Antisense
ATCGATTTGTGGAACCTCGGCGACT 127 37 927 Antisense
Sequence Source Affymetrix Proprietary Database