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[180448_s_at]

Description T04C12.1 /REP_DB=WormBase Gene ID /WP=CE13142 /TR=O02295 /GB=CAB04679.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 99      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 59      6grp_total > 95      4grp_total > 11      6grp_total_sub > Increase      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3604
1 2 3 4 range
A 1056.6
(-2.3)
P 		1038.3
(-2.3)
P 		697
(-3)
P 		3693.3
(3)
P 		2996
B 1161.5
(-2.4)
P 		1054.5
(-2.6)
P 		802
(-3)
P 		4189
(3)
P 		3387
C 1133.8
(-1.9)
P 		1107.5
(-2)
P 		585.1
(-3)
P 		3606.7
(3)
P 		3022
avr 1117.3
(-2.2) 		1066.8
(-2.3) 		694.7
(-3) 		3829.7
(3) 		3135

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3803
1 2 3 4 5 6 range
A 1495.2
(-2.2)
P 		980.5
(-3)
P 		1122.8
(-2.8)
P 		3284.2
(0.7)
P 		4741.6
(3)
P 		4107
(2)
P 		3761
B 1329.8
(-2.3)
P 		1143
(-2.6)
P 		938.3
(-3)
P 		3139.9
(1.1)
P 		4179.1
(3)
P 		4035.5
(2.7)
P 		3241
C 1458
(-2.1)
P 		1129.8
(-2.7)
P 		956.8
(-3)
P 		3016
(0.5)
P 		4011.1
(2.3)
P 		4446.6
(3)
P 		3490
avr 1427.7
(-2.2) 		1084.4
(-2.9) 		1006
(-3) 		3146.7
(0.9) 		4310.6
(3) 		4196.4
(2.8) 		3305
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 711
1 2 3 4 range
A 384.7
(0.4)
P 		225.4
(-2.3)
P 		182.2
(-3)
P 		540.6
(3)
P 		358
B 370.4
(-1.4)
P 		260.4
(-2.4)
P 		185.8
(-3)
P 		892.7
(3)
P 		707
C 375.3
(-0.5)
P 		318.4
(-1.3)
P 		203.9
(-3)
P 		608.1
(3)
P 		404
avr 376.8
(-0.7) 		268.1
(-2.1) 		190.6
(-3) 		680.5
(3) 		490

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1470
1 2 3 4 5 6 range
A 275.6
(-2.8)
P 		348.7
(-2.5)
P 		244.5
(-3)
P 		833
(-0)
P 		1430.8
(3)
P 		999.9
(0.8)
P 		1186
B 462.7
(-2)
P 		380.5
(-2.4)
P 		227.9
(-3)
P 		831.6
(-0.5)
P 		1697.9
(3)
P 		1504.8
(2.2)
P 		1470
C 540.4
(-1.6)
P 		344.7
(-2.5)
P 		243.5
(-3)
P 		606.5
(-1.3)
P 		1297.9
(2.1)
P 		1488.5
(3)
P 		1245
avr 426.2
(-2.1) 		358
(-2.4) 		238.6
(-3) 		757
(-0.5) 		1475.5
(3) 		1331.1
(2.3) 		1237
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180448_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13304
Sequence Type Exemplar sequence
Representative Public ID T04C12.1 NCBI
Target Description T04C12.1 /REP_DB=WormBase Gene ID /WP=CE13142 /TR=O02295 /GB=CAB04679.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073414(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073414 NCBI Caenorhabditis elegans T04C12.1 (T04C12.1) mRNA, complete cds. 11/11 None
T04C12.1 ENSEMBL cdna:known chromosome:CEL140:V:11061234:11062863:-1 gene:T04C12.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040051 6/11 Cross Hyb Matching Probes None
SNAP00000040052 5/11 Cross Hyb Matching Probes None
GENEFINDER00000040058 2/11 Cross Hyb Matching Probes None
GENEFINDER00000040061 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11061281-11062863(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T04C12.1
Entrez Gene 179531 Entrez gene
SwissProt O02295 EMBL-EBI
WormBase CE13142 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04679 Hypothetical protein T04C12.1 [Caenorhabditis elegans] ref|NP_505815.1| T04C12.1 [Caenorhabditis elegans] 1.0E-109
blast CAE75158 Hypothetical protein CBG23095 [Caenorhabditis briggsae] 6.0E-43
blast CAE75159 Hypothetical protein CBG23096 [Caenorhabditis briggsae] 9.0E-36
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 2.29999995231628
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505815.1 2 84-106,195-212
T04C12.1 2 84-106,195-212
Sequence
Target Sequence 
>C. ELEGANS:180448_S_AT
aaaccatgccaacattgcggtgctccaccacaagcacaggctgccaacttaccacacgaa
caagtgctcatctggccagcagctcgtccaacaaatcacattcatcaggactctcgtcaa
ttcatcggatatgttcttatcattgcaattgttattttcttgttgttcgctgcttgcaat
tcattttgccaccccaattcacttacaaataccataaacccaatgtctgaaagtccaact
gcaattgtcatgcctccaccatatatggacccggcaaactcacaagccaagaaacaacga
cagagttttcgtcaggaatccatccgaaaactgaaagtttgtgagcattgcggtgctcta
ccacatgctcagatcaggaacttgccggaagaacaagtgttcacatggccagctgctcgt
cctatcaattcaattcaacaagactctcgccaattcatcggatatgtcattatcattgct
cttgtcattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACCATGCCAACATTGCGGTGCTC 38 125 142 Antisense
CACGAACAAGTGCTCATCTGGCCAG 454 199 196 Antisense
AATCACATTCATCAGGACTCTCGTC 495 171 235 Antisense
GGACTCTCGTCAATTCATCGGATAT 214 525 249 Antisense
TGTTATTTTCTTGTTGTTCGCTGCT 641 561 291 Antisense
GTCCAACTGCAATTGTCATGCCTCC 581 477 374 Antisense
ATATGGACCCGGCAAACTCACAAGC 684 17 404 Antisense
AACAAGTGTTCACATGGCCAGCTGC 709 133 533 Antisense
CTGCTCGTCCTATCAATTCAATTCA 593 237 554 Antisense
AGACTCTCGCCAATTCATCGGATAT 460 71 582 Antisense
GTCATTATCATTGCTCTTGTCATTT 45 469 607 Antisense
Sequence Source Affymetrix Proprietary Database