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[180446_at] 7TM chemoreceptor, srx family

Description C03A7.5 /REP_DB=WormBase Gene ID /WP=CE07863 /TR=O16498 /GB=AAB66002.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 20      6grp_cgc > 34      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 71.9
(-1.7)
P 		79.2
(-1.4)
A 		39.9
(-3)
A 		185.7
(3)
P 		146
B 97.5
(0.5)
P 		79.9
(-0.4)
A 		27
(-3)
A 		146.9
(3)
P 		120
C 87.9
(-0.4)
P 		73
(-1.2)
A 		40.6
(-3)
A 		148.7
(3)
P 		108
avr 85.8
(-0.6) 		77.4
(-1) 		35.8
(-3) 		160.4
(3) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 97.1
(3)
A 		49.8
(-1.4)
A 		75.1
(1)
A 		40.4
(-2.2)
A 		33.3
(-2.9)
A 		32.2
(-3)
A 		65
B 73
(0.4)
A 		101.1
(3)
P 		75.8
(0.6)
A 		44.7
(-2.2)
A 		51.9
(-1.6)
A 		36.6
(-3)
A 		65
C 21.7
(-1.8)
A 		80.6
(3)
A 		59.5
(1.3)
A 		43.5
(-0)
A 		7
(-3)
A 		46.2
(0.2)
A 		74
avr 63.9
(1.3) 		77.2
(3) 		70.1
(2.1) 		42.9
(-1.4) 		30.7
(-3) 		38.3
(-2) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 26.2
(2.6)
P 		17.2
(-0.6)
A 		10.4
(-3)
A 		27.2
(3)
P 		17
B 31.1
(3)
P 		19.7
(0.2)
A 		6.3
(-3)
A 		31.3
(3)
P 		25
C 29.1
(3)
P 		21
(-0.3)
A 		14.2
(-3)
A 		25.1
(1.4)
P 		15
avr 28.8
(3) 		19.3
(-0.1) 		10.3
(-3) 		27.9
(2.7) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 17.9
(3)
A 		17.7
(2.9)
A 		16.4
(2.1)
A 		10.3
(-1.5)
A 		10
(-1.7)
A 		7.8
(-3)
A 		10
B 25.4
(0.7)
A 		33.6
(3)
P 		18.4
(-1.2)
A 		11.8
(-3)
A 		21.1
(-0.4)
A 		13.6
(-2.5)
A 		22
C 8
(-1.5)
A 		24.6
(3)
A 		15.2
(0.5)
A 		8.7
(-1.3)
A 		2.3
(-3)
A 		15.5
(0.6)
A 		22
avr 17.1
(-0.3) 		25.3
(3) 		16.7
(-0.4) 		10.3
(-3) 		11.1
(-2.7) 		12.3
(-2.2) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180446_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15724
Sequence Type Exemplar sequence
Representative Public ID C03A7.5 NCBI
Target Description C03A7.5 /REP_DB=WormBase Gene ID /WP=CE07863 /TR=O16498 /GB=AAB66002.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071979(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071979 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-38) (srx-38) mRNA, complete cds. 11/11 None
GENEFINDER00000035299 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5153713:5155329:-1 11/11 None
C03A7.5 ENSEMBL cdna:known chromosome:CEL140:V:5153870:5155329:-1 gene:C03A7.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035277 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5153869-5155329(-) 96.13 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-38
Ensembl C03A7.5
Entrez Gene 182137 Entrez gene
SwissProt O16498 EMBL-EBI
WormBase CE35215 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66002 Serpentine receptor, class x protein 38 [Caenorhabditis elegans] ref|NP_504380.2| Serpentine Receptor, class X family member (srx-38) [Caenorhabditis elegans] 1.0E-159
blast AAB66002 Serpentine receptor, class x protein 38 [Caenorhabditis elegans] ref|NP_504380.2| Serpentine Receptor, class X family member (srx-38) [Caenorhabditis elegans] 1.0E-151
blast CAB03313 Hypothetical protein T06E6.3 [Caenorhabditis elegans] ref|NP_506827.1| Serpentine Receptor, class X family member (srx-40) [Caenorhabditis elegans] 1.0E-105
blast AAB65997 Serpentine receptor, class x protein 39 [Caenorhabditis elegans] ref|NP_504381.2| Serpentine Receptor, class X family member (srx-39) [Caenorhabditis elegans] 1.0E-101
blast CAB03313 Hypothetical protein T06E6.3 [Caenorhabditis elegans] ref|NP_506827.1| Serpentine Receptor, class X family member (srx-40) [Caenorhabditis elegans] 1.0E-99
blast AAB65997 Serpentine receptor, class x protein 39 [Caenorhabditis elegans] ref|NP_504381.2| Serpentine Receptor, class X family member (srx-39) [Caenorhabditis elegans] 2.0E-95
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504380.2 6 7-29,39-61,74-96,122-144,218-235,240-262
C03A7.5 6 7-29,39-61,74-96,122-144,218-235,240-262
GENEFINDER00000035299 6 7-29,39-61,74-96,122-144,218-235,257-279
Sequence
Target Sequence 
>C. ELEGANS:180446_AT
gcagtatttactccagttctttatcataaaatgttcagtataacatttaccaaactaatt
gttatggctacctacttactttcgtttatacttatcactttgttctttcaaattttgggc
tgccagaattactacaacgcagaataccgagcatttcaatattccggtggggcaatttgt
agtttgtatggaacttatggggatttttatcaagttttcactctaaccattaccagcaca
cttttggatttcactgcaattgggaaagtggtgaaaatgcggtcgaaatccgacaaaaac
tcgaaagagttgagtttattaaagcagtccctcagccaaactttatttgttcttgtcatt
gtttgctgtttcacatggggaccacgacttatcccagaaaagcaattcacatttatattc
tcttcaattttatggtcatcagttcattgtttcgatggaatattcacactgatcttcaat
tcggaaattcgcagaaaaattagttcaacgcggcccacagtcatggtcgtgagcgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGTATTTACTCCAGTTCTTTATC 154 311 367 Antisense
TTATGGCTACCTACTTACTTTCGTT 221 681 428 Antisense
TGGGCTGCCAGAATTACTACAACGC 55 555 482 Antisense
ATATTCCGGTGGGGCAATTTGTAGT 561 17 525 Antisense
GTTTTCACTCTAACCATTACCAGCA 261 449 580 Antisense
ATTACCAGCACACTTTTGGATTTCA 436 13 595 Antisense
TATTAAAGCAGTCCCTCAGCCAAAC 547 659 683 Antisense
TGTTCTTGTCATTGTTTGCTGTTTC 21 563 714 Antisense
CATGGGGACCACGACTTATCCCAGA 216 209 740 Antisense
ATGGTCATCAGTTCATTGTTTCGAT 682 49 798 Antisense
CCCACAGTCATGGTCGTGAGCGCTG 9 257 880 Antisense
Sequence Source Affymetrix Proprietary Database