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[180445_at]

Description ZC404.2 /REP_DB=WormBase Gene ID /WP=CE07593 /TR=Q23289 /GB=AAA97965.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 31.7
(-1.6)
A 		20.5
(-3)
A 		31.4
(-1.6)
A 		67.4
(3)
A 		47
B 10.2
(-2.2)
A 		2.1
(-3)
A 		9.8
(-2.3)
A 		66.6
(3)
P 		65
C 12.3
(-3)
A 		51.8
(-0.8)
A 		24.8
(-2.3)
A 		121.6
(3)
P 		109
avr 18.1
(-3) 		24.8
(-2.4) 		22
(-2.7) 		85.2
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 5.7
(-3)
A 		6.3
(-2.9)
A 		30.3
(-0.7)
A 		23.5
(-1.3)
A 		47.4
(0.9)
A 		70.4
(3)
A 		65
B 7.8
(-2.9)
A 		11.2
(-2.6)
A 		6.3
(-3)
A 		33.8
(-0.7)
A 		58.8
(1.4)
A 		77.4
(3)
A 		71
C 27.9
(-1.5)
A 		44.9
(-0.2)
A 		8.4
(-3)
A 		50.5
(0.2)
A 		49.4
(0.1)
A 		87
(3)
M 		79
avr 13.8
(-3) 		20.8
(-2.3) 		15
(-2.9) 		35.9
(-0.9) 		51.9
(0.5) 		78.3
(3) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 11.5
(3)
A 		4.4
(-3)
A 		8.2
(0.2)
A 		9.9
(1.6)
A 		7
B 3.2
(-1.8)
A 		0.5
(-3)
A 		2.3
(-2.2)
A 		14.2
(3)
P 		14
C 4.1
(-3)
A 		14.9
(1)
A 		8.6
(-1.4)
A 		20.5
(3)
P 		16
avr 6.3
(-3) 		6.6
(-2.8) 		6.4
(-2.9) 		14.9
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 1.1
(-3)
A 		2.2
(-2.6)
A 		6.6
(-0.9)
A 		6
(-1.2)
A 		14.3
(2)
A 		17.1
(3)
A 		16
B 2.7
(-2.7)
A 		3.7
(-2.5)
A 		1.5
(-3)
A 		9
(-1.4)
A 		23.9
(1.9)
A 		28.8
(3)
A 		27
C 10.3
(-1.2)
A 		13.7
(-0.4)
A 		2.1
(-3)
A 		10.2
(-1.2)
A 		16
(0.1)
A 		29.1
(3)
M 		27
avr 4.7
(-2.6) 		6.5
(-2.1) 		3.4
(-3) 		8.4
(-1.6) 		18.1
(1.1) 		25
(3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180445_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11526
Sequence Type Exemplar sequence
Representative Public ID ZC404.2 NCBI
Target Description ZC404.2 /REP_DB=WormBase Gene ID /WP=CE07593 /TR=Q23289 /GB=AAA97965.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000042517 ENSEMBL cdna:SNAP chromosome:CEL140:V:6790569:6791004:1 None
GENEFINDER00000042524 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6788085:6790924:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6790640-6791005(+) 64.47 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA97964 Defective spermatogenesis protein 39, isoform a [Caenorhabditis elegans] ref|NP_504718.1| defective SPErmatogenesis family member (spe-39) [Caenorhabditis elegans] 0.0
blast CAE71950 Hypothetical protein CBG19018 [Caenorhabditis briggsae] 0.0
blast CAH68911 chromosome 14 open reading frame 133 [Danio rerio] emb|CAH69151.1| chromosome 14 open reading frame 133 [Danio rerio] 2.0E-30
blast T29371 hypothetical protein ZC404.2 - Caenorhabditis elegans 2.0E-14
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000042517 1 41-63
Sequence
Target Sequence 
>C. ELEGANS:180445_AT
tattggcggaaaaccactaaattcaaattgacccatggagcgcgcttgcacctcaatttc
aaagatttgttgtttcagacaagtaagactactgcaagcagctctaagaaaacatcaatt
tcgagtggaaaaccgaaaactccacgacgaaagaagcccggcgctgtttcaagacttctc
accacagaactaccgctgaattttctcttcatttacattgtgttggctgcaatgtttacc
accc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTGGCGGAAAACCACTAAATTCA 369 665 52 Antisense
TCAAATTGACCCATGGAGCGCGCTT 206 629 74 Antisense
GCGCTTGCACCTCAATTTCAAAGAT 699 287 93 Antisense
GTAAGACTACTGCAAGCAGCTCTAA 192 461 134 Antisense
ACTCCACGACGAAAGAAGCCCGGCG 696 89 190 Antisense
AAAGAAGCCCGGCGCTGTTTCAAGA 652 121 201 Antisense
GCTGTTTCAAGACTTCTCACCACAG 698 295 214 Antisense
CTCACCACAGAACTACCGCTGAATT 689 227 229 Antisense
ACTACCGCTGAATTTTCTCTTCATT 225 101 240 Antisense
TTTCTCTTCATTTACATTGTGTTGG 516 671 253 Antisense
GTGTTGGCTGCAATGTTTACCACCC 481 485 271 Antisense
Sequence Source Affymetrix Proprietary Database