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[180439_at]

Description C26B9.3 /REP_DB=WormBase Gene ID /WP=CE04097 /TR=Q18200 /GB=AAA82455.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 81      6grp_highest_nonorm > 44      6grp_total > 72      4grp_total > 56      6grp_highest_sub > 04_05      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3674
1 2 3 4 range
A 111.3
(-2.9)
P 		2681.3
(1.3)
P 		3718.7
(3)
P 		44.8
(-3)
A 		3674
B 137.1
(-2.9)
P 		2767.5
(1.6)
P 		3603
(3)
P 		51.8
(-3)
A 		3551
C 161.8
(-2.8)
P 		2702
(1.6)
P 		3471.2
(3)
P 		68.9
(-3)
A 		3402
avr 136.7
(-2.9) 		2716.9
(1.5) 		3597.6
(3) 		55.2
(-3) 		3542

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3090
1 2 3 4 5 6 range
A 585.1
(-3)
P 		2254.6
(0.4)
P 		2020.5
(-0.1)
P 		3538.1
(3)
P 		2685.2
(1.3)
P 		812.4
(-2.5)
P 		2953
B 463
(-3)
P 		1656.7
(0.1)
P 		2068.4
(1.2)
P 		2557.6
(2.5)
P 		2757.7
(3)
P 		855.8
(-2)
P 		2295
C 448.5
(-3)
P 		1674.7
(-0.4)
P 		2451.3
(1.3)
P 		3233.8
(3)
P 		2903.4
(2.3)
P 		897.4
(-2)
P 		2785
avr 498.9
(-3) 		1862
(0.1) 		2180.1
(0.9) 		3109.8
(3) 		2782.1
(2.2) 		855.2
(-2.2) 		2611
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1203
1 2 3 4 range
A 40.5
(-2.8)
P 		582
(0.6)
P 		972.1
(3)
P 		6.6
(-3)
A 		966
B 43.7
(-2.8)
P 		683.5
(1.9)
P 		834.9
(3)
P 		11
(-3)
A 		824
C 53.6
(-2.8)
P 		776.9
(0.8)
P 		1209.8
(3)
P 		11.6
(-3)
A 		1198
avr 45.9
(-2.8) 		680.8
(1) 		1005.6
(3) 		9.7
(-3) 		996

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1013
1 2 3 4 5 6 range
A 107.9
(-3)
P 		801.9
(2.3)
P 		440
(-0.5)
P 		897.4
(3)
P 		810.3
(2.3)
P 		197.8
(-2.3)
P 		790
B 161.1
(-3)
P 		551.5
(-0.6)
P 		502.3
(-0.9)
P 		677.4
(0.2)
P 		1120.4
(3)
P 		319.1
(-2)
P 		959
C 166.2
(-3)
P 		511
(-0.3)
P 		623.9
(0.6)
P 		650.3
(0.8)
P 		939.5
(3)
P 		300.4
(-2)
P 		773
avr 145.1
(-3) 		621.5
(0.5) 		522.1
(-0.2) 		741.7
(1.4) 		956.7
(3) 		272.4
(-2.1) 		812
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180439_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16818
Sequence Type Exemplar sequence
Representative Public ID C26B9.3 NCBI
Target Description C26B9.3 /REP_DB=WormBase Gene ID /WP=CE04097 /TR=Q18200 /GB=AAA82455.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076504(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076504 NCBI Caenorhabditis elegans C26B9.3 (C26B9.3) mRNA, complete cds. 10/11 None
SNAP00000015897 ENSEMBL cdna:SNAP chromosome:CEL140:X:5338309:5340028:1 10/11 None
GENEFINDER00000015904 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5338309:5340028:1 10/11 None
C26B9.3 ENSEMBL cdna:known chromosome:CEL140:X:5338281:5340129:1 gene:C26B9.3 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5338309-5340029(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C26B9.3
Entrez Gene 180804 Entrez gene
SwissProt Q18200 EMBL-EBI
WormBase CE29187 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82455 Hypothetical protein C26B9.3 [Caenorhabditis elegans] ref|NP_508905.1| C26B9.3 [Caenorhabditis elegans] 1.0E-149
blast CAE68736 Hypothetical protein CBG14666 [Caenorhabditis briggsae] 1.0E-145
Sequence
Target Sequence 
>C. ELEGANS:180439_AT
aatccagtcattccagggtgtatcaaaattaaggcagaaggagttgaaatcacgagacca
acaaaaaatttgattgccgaagttgaaatgagaatcggaggaactccggatccaaacaat
ccatcccttccatgctcgaaaaaaatcgacgagaaggtgaaccagtgcccgtgcgccaaa
ttggaaggatcttgcgtgttctgcgacttctgcaagcaacttaaggctcaaacgtccaaa
atcacacctagcaagctcagcagacctgaacacaagttgatcgatgaggattgcaagtat
gccattttgttttcactctcattactcgtggtatgtggtgatatgcaaccaggactttac
gatattgagacagaaatgtgcacaccagaaatggacgatttcaaggattacattccacca
gagattcagaacaacatccttgaaaagaagcctatttccatgttcatcactgtatattta
atggatatggagccacggtcttccaaagaatcatatttatctgcgttcggaaaagcaatt
ctgcaaagaagaatggctcagagcactgttgcgtgctttttacttggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCCAGTCATTCCAGGGTGTATCA 250 165 199 Antisense
GGAGGAACTCCGGATCCAAACAATC 542 515 295 Antisense
GTGCCCGTGCGCCAAATTGGAAGGA 211 477 363 Antisense
TGGAAGGATCTTGCGTGTTCTGCGA 380 547 380 Antisense
GTGTTCTGCGACTTCTGCAAGCAAC 578 485 394 Antisense
CAAACGTCCAAAATCACACCTAGCA 472 191 427 Antisense
ACACCTAGCAAGCTCAGCAGACCTG 671 109 442 Antisense
GTTTTCACTCTCATTACTCGTGGTA 140 449 507 Antisense
AGCCTATTTCCATGTTCATCACTGT 128 83 647 Antisense
GGATATGGAGCCACGGTCTTCCAAA 545 507 681 Antisense
CACTGTTGCGTGCTTTTTACTTGGC 700 195 762 Antisense
Sequence Source Affymetrix Proprietary Database