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[180437_at]

Description F29C12.3 /REP_DB=WormBase Gene ID /WP=CE20734 /TR=Q9XV48 /GB=CAB04220.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 14      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 229
1 2 3 4 range
A 192.6
(3)
A 		55.4
(-3)
A 		55.4
(-3)
A 		160
(1.6)
A 		137
B 183.7
(3)
A 		85.3
(-0.6)
A 		19.2
(-3)
A 		177.4
(2.8)
A 		165
C 160.9
(0.9)
A 		14
(-3)
A 		101.8
(-0.7)
A 		242.5
(3)
A 		229
avr 179.1
(2.4) 		51.6
(-3) 		58.8
(-2.7) 		193.3
(3) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 228
1 2 3 4 5 6 range
A 91.5
(-1.2)
A 		152.2
(0.4)
A 		46.1
(-2.4)
A 		86.7
(-1.3)
A 		22.7
(-3)
A 		251
(3)
A 		228
B 85.9
(-2.6)
A 		107.8
(-0.6)
A 		82
(-3)
A 		109.2
(-0.4)
A 		89
(-2.3)
A 		145.9
(3)
M 		64
C 129.1
(2.2)
A 		62.8
(-1.1)
A 		145.7
(3)
A 		23
(-3)
A 		118.2
(1.7)
A 		142
(2.8)
A 		123
avr 102.2
(-1.4) 		107.6
(-1.1) 		91.3
(-2) 		73
(-3) 		76.6
(-2.8) 		179.6
(3) 		107
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 70.1
(3)
A 		12
(-3)
A 		14.5
(-2.7)
A 		23.4
(-1.8)
A 		58
B 58.6
(3)
A 		21.1
(-1.2)
A 		4.5
(-3)
A 		37.8
(0.7)
A 		54
C 53.3
(3)
A 		4
(-3)
A 		35.5
(0.8)
A 		40.9
(1.5)
A 		49
avr 60.7
(3) 		12.4
(-3) 		18.2
(-2.3) 		34
(-0.3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 16.9
(-1.9)
A 		54.1
(2.2)
A 		10
(-2.7)
A 		22
(-1.3)
A 		6.9
(-3)
A 		61.1
(3)
A 		54
B 29.9
(-1.3)
A 		35.9
(-0.2)
A 		19.9
(-3)
A 		28.9
(-1.4)
A 		36.2
(-0.2)
A 		54.4
(3)
M 		35
C 47.9
(3)
A 		19.2
(-1)
A 		37.1
(1.5)
A 		4.6
(-3)
A 		38.3
(1.7)
A 		47.5
(2.9)
A 		43
avr 31.6
(-0.8) 		36.4
(0) 		22.3
(-2.4) 		18.5
(-3) 		27.1
(-1.6) 		54.3
(3) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180437_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2853
Sequence Type Exemplar sequence
Representative Public ID F29C12.3 NCBI
Target Description F29C12.3 /REP_DB=WormBase Gene ID /WP=CE20734 /TR=Q9XV48 /GB=CAB04220.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064385(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064385 NCBI Caenorhabditis elegans F29C12.3 (F29C12.3) mRNA, complete cds. 11/11 None
SNAP00000014924 ENSEMBL cdna:SNAP chromosome:CEL140:II:13110079:13127352:-1 11/11 None
GENEFINDER00000014930 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13110083:13116697:-1 11/11 None
F29C12.3 ENSEMBL cdna:known chromosome:CEL140:II:13110079:13116697:-1 gene:F29C12.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064383 3/11 Cross Hyb Matching Probes None
F29C12.2 3/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13110075-13116694(-) 99.24 100.0
Public Domain and Genome References
Gene Title
Ensembl F29C12.3
Entrez Gene 3565035 Entrez gene
SwissProt Q9XV48 EMBL-EBI
WormBase CE20734 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04220 Hypothetical protein F29C12.3 [Caenorhabditis elegans] ref|NP_496786.1| F29C12.3 [Caenorhabditis elegans] 0.0
blast CAE59415 Hypothetical protein CBG02784 [Caenorhabditis briggsae] 0.0
blast CAE59415 Hypothetical protein CBG02784 [Caenorhabditis briggsae] 1.0E-174
Sequence
Target Sequence 
>C. ELEGANS:180437_AT
agagtctccaggtgagttcagcgagactgtgctccgtggaagatacgataagaatgcgtt
gatgttgatggatgatgctgacgattatgattacgcagctccgaacatcagagacacgct
tgacgatgaggaggagaatgcgaagaagtttttcgtcgattcaaccggagcatttgactg
gaactatgtggagtattatgttgagaatatcgagaaggatggctacgagaagcttctcaa
agaattcacatcgaacactattcaagttcatatttcaaatatgttccaatacatctcacc
atccgaacaggagaagcacaaaagatgcatagatcggcaacaagtgattgtgacgaaaag
cctaatcaagcttctgctccgagtgttccagaaagaagcccatatcagtgatgcctatca
gccaatctttctgaaatatgttgaaagctttaaagctcttttggaaaagagatccaatcc
gaatgcctactttgctgctcgcaacctttcctacaccaactcgatgcttcatttcgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGTCTCCAGGTGAGTTCAGCGAG 471 67 2046 Antisense
TTCAGCGAGACTGTGCTCCGTGGAA 21 689 2062 Antisense
TGACGATTATGATTACGCAGCTCCG 168 571 2124 Antisense
GCAGCTCCGAACATCAGAGACACGC 264 313 2140 Antisense
GTTTTTCGTCGATTCAACCGGAGCA 221 447 2193 Antisense
TATGTTCCAATACATCTCACCATCC 253 655 2325 Antisense
GCTTCTGCTCCGAGTGTTCCAGAAA 142 307 2415 Antisense
GAAGCCCATATCAGTGATGCCTATC 685 343 2440 Antisense
TGATGCCTATCAGCCAATCTTTCTG 24 567 2454 Antisense
AGAGATCCAATCCGAATGCCTACTT 111 69 2513 Antisense
CACCAACTCGATGCTTCATTTCGCC 114 203 2559 Antisense
Sequence Source Affymetrix Proprietary Database