[Home] | [Total List]

[180436_s_at]

Description F52C6.8 /REP_DB=WormBase Gene ID /WP=CE10816 /TR=O44815 /GB=AAB94974.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 32      6grp_cgc > 79      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 7.2
(-3)
A 		62.3
(3)
A 		28.2
(-0.7)
A 		16.6
(-2)
A 		55
B 30.2
(3)
A 		7.1
(-3)
A 		26.2
(2)
A 		22.2
(0.9)
A 		23
C 19.9
(-3)
A 		36.3
(-1.2)
A 		66.2
(2.1)
A 		74.6
(3)
A 		55
avr 19.1
(-3) 		35.2
(1.6) 		40.2
(3) 		37.8
(2.3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 174
1 2 3 4 5 6 range
A 47.9
(-0.9)
A 		12.8
(-2.9)
A 		10.2
(-3)
A 		56.1
(-0.5)
A 		118.8
(3)
A 		116.8
(2.9)
A 		109
B 14.2
(-3)
A 		46.2
(-1.9)
A 		59.4
(-1.4)
A 		69.4
(-1.1)
A 		160.8
(2.2)
A 		184.4
(3)
A 		170
C 33.3
(-2.8)
A 		32.2
(-2.9)
A 		29.8
(-3)
A 		38.2
(-2.5)
A 		103.6
(1.1)
A 		138.9
(3)
A 		109
avr 31.8
(-2.9) 		30.4
(-3) 		33.1
(-2.9) 		54.6
(-1.8) 		127.7
(2) 		146.7
(3) 		116
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 2.6
(-2.9)
A 		13.5
(3)
A 		7.4
(-0.3)
A 		2.4
(-3)
A 		11
B 9.6
(3)
A 		1.8
(-3)
A 		6.1
(0.3)
A 		4.7
(-0.8)
A 		8
C 6.6
(-3)
A 		10.4
(-1.6)
A 		23.1
(3)
A 		12.6
(-0.8)
A 		17
avr 6.3
(-3) 		8.6
(-0.7) 		12.2
(3) 		6.6
(-2.7) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 8.8
(-1.8)
A 		4.5
(-2.6)
A 		2.2
(-3)
A 		14.2
(-0.9)
A 		35.8
(3)
A 		28.4
(1.7)
A 		34
B 5
(-3)
A 		15.4
(-2)
A 		14.4
(-2.1)
A 		18.4
(-1.7)
A 		65.3
(2.7)
A 		68.8
(3)
A 		64
C 12.3
(-2.3)
A 		9.8
(-2.7)
A 		7.6
(-3)
A 		7.7
(-3)
A 		33.5
(1)
A 		46.5
(3)
A 		39
avr 8.7
(-2.9) 		9.9
(-2.7) 		8.1
(-3) 		13.4
(-2.2) 		44.9
(2.5) 		47.9
(3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180436_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5265
Sequence Type Exemplar sequence
Representative Public ID F52C6.8 NCBI
Target Description F52C6.8 /REP_DB=WormBase Gene ID /WP=CE10816 /TR=O44815 /GB=AAB94974.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061756(11), NM_061721(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061756 NCBI Caenorhabditis elegans F59H6.10 (F59H6.10) mRNA, complete cds. 11/11 A 
NM_061721 NCBI Caenorhabditis elegans F52C6.8 (F52C6.8) mRNA, complete cds. 11/11 A 
SNAP00000002429 ENSEMBL cdna:SNAP chromosome:CEL140:II:2029326:2030464:-1 11/11 None
GENEFINDER00000002446 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2029326:2030464:-1 11/11 None
SNAP00000005720 ENSEMBL cdna:SNAP chromosome:CEL140:II:1913607:1917954:-1 11/11 None
GENEFINDER00000005741 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1916800:1917781:-1 11/11 None
F52C6.8 ENSEMBL cdna:known chromosome:CEL140:II:1916800:1917954:-1 gene:F52C6.8 11/11 A 
F59H6.10 ENSEMBL cdna:known chromosome:CEL140:II:2029326:2030672:-1 gene:F59H6.10 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1916798-1917953(-) 100.0 100.0
chrII:2029324-2030463(-) 93.27 93.27
Public Domain and Genome References
Gene Title

Gene Symbol bath-4
bath-3
Ensembl F52C6.8
F59H6.10
Entrez Gene 186090 Entrez gene
186649 Entrez gene
SwissProt O44815 EMBL-EBI
WormBase CE10816 Wormbase
CE39104 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_494157 F59H6.10 [Caenorhabditis elegans] 0.0
blast AAF39858 Hypothetical protein F59H6.10 [Caenorhabditis elegans] 1.0E-169
blast AAF39858 Hypothetical protein F59H6.10 [Caenorhabditis elegans] 1.0E-165
blast NP_494157 F59H6.10 [Caenorhabditis elegans] 1.0E-165
blast AAB94974 Hypothetical protein F52C6.8 [Caenorhabditis elegans] ref|NP_494122.1| F52C6.8 [Caenorhabditis elegans] 1.0E-158
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 3.0E-36
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.0E-39
Pfam IPR002083 EMBL-EBI MATH 4.1E-39
Pfam IPR002083 EMBL-EBI MATH 2.7E-25
Pfam IPR000210 EMBL-EBI BTB/POZ domain 7.3E-39
Pfam IPR000210 EMBL-EBI BTB/POZ domain 5.7E-31
Pfam IPR002083 EMBL-EBI MATH 7.3E-26
Pfam IPR000210 EMBL-EBI BTB/POZ domain 7.3E-39
Pfam IPR002083 EMBL-EBI MATH 3.0E-36
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.1E-24
Pfam IPR000210 EMBL-EBI BTB/POZ domain 9.5E-10
Sequence
Target Sequence 
>C. ELEGANS:180436_S_AT
attagttgggagatgctggcgaaggattatataattgatgatattattatcgctgaggca
actgtaaaggtcactaatatgactggaattctgaagaaaaagctcaaaagcttcgaaaaa
tctgaggaacaattttccgatgtaattctcgctgttgaagatgaaacattccatgttttg
aagaaattcctggcctcccattccacatatttcaacgctcttcttctcgggaaattcaag
gaagccgagatttcagaagtcgcgctcaaggacattgattccacggattttcagaatctt
ttggaggttttgtatggcgaatcggctattgatgaagacaccatcgaaggaattctccac
ctggcccacatgtatgatatgccatttccaacccgaaaatgcgaggaattcctcatcgat
ttttctgaaaaaccaattaaggagaagctcaaagtcgctaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTAGTTGGGAGATGCTGGCGAAGG 428 11 325 Antisense
GTTGGGAGATGCTGGCGAAGGATTA 133 435 329 Antisense
TTTTGAAGAAATTCCTGGCCTCCCA 571 677 500 Antisense
GAAGCCGAGATTTCAGAAGTCGCGC 30 345 565 Antisense
AGATTTCAGAAGTCGCGCTCAAGGA 451 65 572 Antisense
GTCGCGCTCAAGGACATTGATTCCA 405 475 583 Antisense
ATTCCACGGATTTTCAGAATCTTTT 188 7 602 Antisense
ATGCCATTTCCAACCCGAAAATGCG 272 41 703 Antisense
GAGGAATTCCTCATCGATTTTTCTG 353 405 727 Antisense
GGAATTCCTCATCGATTTTTCTGAA 116 535 729 Antisense
AAGGAGAAGCTCAAAGTCGCTAAAA 611 159 763 Antisense
Sequence Source Affymetrix Proprietary Database